View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2396_high_12 (Length: 288)

Name: NF2396_high_12
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2396_high_12
NF2396_high_12
[»] chr8 (22 HSPs)
chr8 (94-270)||(27804954-27805130)
chr8 (96-245)||(6345674-6345822)
chr8 (96-245)||(37948525-37948673)
chr8 (96-245)||(1265483-1265631)
chr8 (97-244)||(3774202-3774347)
chr8 (96-245)||(31126841-31126989)
chr8 (96-245)||(43619620-43619768)
chr8 (96-204)||(10182832-10182939)
chr8 (96-245)||(4267743-4267891)
chr8 (96-245)||(13471242-13471391)
chr8 (96-244)||(253188-253335)
chr8 (96-244)||(662523-662670)
chr8 (96-244)||(848321-848468)
chr8 (141-235)||(10636310-10636404)
chr8 (140-242)||(15266349-15266451)
chr8 (96-245)||(4602999-4603147)
chr8 (170-246)||(11863981-11864057)
chr8 (96-245)||(32907309-32907457)
chr8 (97-245)||(12522773-12522920)
chr8 (141-193)||(5327503-5327555)
chr8 (96-136)||(26720846-26720886)
chr8 (177-237)||(44902728-44902788)
[»] chr4 (17 HSPs)
chr4 (96-251)||(9280302-9280456)
chr4 (96-245)||(34277336-34277485)
chr4 (96-245)||(24574738-24574886)
chr4 (96-246)||(42414128-42414276)
chr4 (94-245)||(7612418-7612568)
chr4 (96-236)||(24319436-24319575)
chr4 (96-245)||(42430380-42430528)
chr4 (96-229)||(23695515-23695637)
chr4 (97-230)||(3757336-3757468)
chr4 (96-245)||(31567723-31567866)
chr4 (118-208)||(47310381-47310469)
chr4 (96-245)||(46251520-46251668)
chr4 (96-245)||(47498427-47498575)
chr4 (96-235)||(47975226-47975364)
chr4 (101-249)||(40436790-40436937)
chr4 (96-162)||(7700661-7700726)
chr4 (96-208)||(8738827-8738928)
[»] chr7 (12 HSPs)
chr7 (96-245)||(1576221-1576369)
chr7 (96-245)||(27392962-27393110)
chr7 (96-245)||(36482233-36482381)
chr7 (94-235)||(8937355-8937495)
chr7 (141-245)||(29987573-29987677)
chr7 (96-245)||(323162-323311)
chr7 (96-259)||(31279729-31279892)
chr7 (96-245)||(36582091-36582234)
chr7 (141-236)||(14242860-14242956)
chr7 (97-129)||(23222885-23222917)
chr7 (180-227)||(23226926-23226974)
chr7 (180-227)||(23236079-23236127)
[»] chr6 (9 HSPs)
chr6 (96-245)||(7607863-7608011)
chr6 (96-245)||(16704945-16705093)
chr6 (101-235)||(10483978-10484107)
chr6 (96-245)||(30395942-30396090)
chr6 (141-241)||(4463776-4463876)
chr6 (96-245)||(21947079-21947227)
chr6 (96-244)||(3900707-3900853)
chr6 (141-245)||(16110641-16110745)
chr6 (198-247)||(31945514-31945563)
[»] chr3 (7 HSPs)
chr3 (97-250)||(37282223-37282375)
chr3 (96-245)||(19636126-19636274)
chr3 (96-230)||(29283358-29283491)
chr3 (100-236)||(25393043-25393168)
chr3 (96-227)||(1030858-1030989)
chr3 (95-245)||(25706671-25706820)
chr3 (141-229)||(27166889-27166977)
[»] chr1 (10 HSPs)
chr1 (96-245)||(41198078-41198226)
chr1 (96-245)||(14462079-14462227)
chr1 (96-245)||(24615165-24615308)
chr1 (96-242)||(35671681-35671826)
chr1 (96-229)||(28655955-28656087)
chr1 (96-245)||(5559762-5559915)
chr1 (97-236)||(11619599-11619732)
chr1 (141-191)||(36851118-36851168)
chr1 (142-184)||(38856216-38856258)
chr1 (145-229)||(534983-535067)
[»] chr5 (12 HSPs)
chr5 (94-245)||(27111041-27111191)
chr5 (100-251)||(35449202-35449352)
chr5 (96-245)||(40044554-40044697)
chr5 (96-245)||(40987717-40987865)
chr5 (96-245)||(1495448-1495596)
chr5 (96-245)||(17342039-17342186)
chr5 (96-245)||(41061621-41061768)
chr5 (94-236)||(33745832-33745972)
chr5 (141-230)||(42715745-42715834)
chr5 (96-228)||(26639796-26639927)
chr5 (96-235)||(4986485-4986623)
chr5 (96-228)||(13555147-13555277)
[»] chr2 (9 HSPs)
chr2 (96-248)||(21351877-21352028)
chr2 (94-248)||(10997612-10997765)
chr2 (96-254)||(42295366-42295523)
chr2 (96-247)||(29772585-29772735)
chr2 (96-235)||(22596730-22596867)
chr2 (96-230)||(16672390-16672518)
chr2 (96-245)||(18511950-18512098)
chr2 (98-245)||(39989200-39989346)
chr2 (179-230)||(19968630-19968681)
[»] scaffold0396 (1 HSPs)
scaffold0396 (96-245)||(846-994)
[»] scaffold0717 (1 HSPs)
scaffold0717 (165-229)||(5955-6019)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 27805130 - 27804954
Alignment:
Q  94 ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    |||||||||||||||||||| || ||||||||||||| ||| |||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  27805130 ctgatccaaattaaaccgcaaatatttggatcggatcgatttgaattttttttaatgtagtcatccaaatcgaaccgaaccgcatgtgatttttattttg 27805031  T
Q  194 gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagctatatcttacgaagtggtac 270  Q
    ||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  27805030 gatcggatgacattttacttcaaaaccgatccaagccacatcgtgaacacccttagctatatcttacgaagtggtac 27804954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 6345674 - 6345822
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  6345674 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 6345772  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  6345773 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 6345822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 37948673 - 37948525
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  37948673 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 37948575  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  37948574 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 37948525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 1265483 - 1265631
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||  || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  1265483 gatccaaattaaaccgcatatatttggatcggatcggttcagat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 1265581  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  1265582 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 1265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 3774202 - 3774347
Alignment:
Q  97 atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat 196  Q
    |||||||||||||||||||| |||||||||| ||  |||| ||  |||||| |||| |||||||||  |||| |||  ||||||||||||||||||||||    
T  3774202 atccaaattaaaccgcatatatttggatcggttcggttcggat--tttttagaatactcatccaaactgaaccgaattgcatgtgatttttattttggat 3774299  T
Q  197 tggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc 244  Q
      | |||||||| || ||||||||||||||||||||||||||||||||    
T  3774300 cagttgacattttacctcaaaaccgatccaaaccacaccgtgaacacc 3774347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 31126989 - 31126841
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||| |||||||  |||  || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  31126989 gatccaaattaaaccgcatatatttgggtcggatcggttcagat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 31126891  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  31126890 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 31126841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 43619768 - 43619620
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||| ||| |||  ||| ||| |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  43619768 gatccaaattaaaccgcatatatttgggtcgaatcggttcaaat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 43619670  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  43619669 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 43619620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 10182939 - 10182832
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||| ||||| ||  ||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  10182939 gatccaaattaaaccgcatatatttgaatcggttcggttcaaat-ttttttaaaatagtcatccaaaccgaaccgaaccgcatgtgatttttattttgga 10182841  T
Q  196 ttggatgac 204  Q
    | |||||||    
T  10182840 tcggatgac 10182832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 4267743 - 4267891
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||||||||||  ||||||||| ||  |||| || |||| |  |||| |||||||||  |||| ||||||||||||||||||||||||||    
T  4267743 gatccaaattaaaccgcatataattggatcggttcggttcggat-ttttctggaatactcatccaaactgaaccgaaccgcatgtgatttttattttgga 4267841  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || |||||| ||||||||||| ||||| ||||||||    
T  4267842 tcggttgacattttacctcaaaatcgatccaaaccgcaccgcgaacaccc 4267891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 13471242 - 13471391
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  ||||||| |||||||| ||| | ||| ||| ||||| |||||||| |||||||||||||||||    
T  13471242 gatccaaattaaaccgcatatatttggatcggatcggttcgaat-ttttttaacataattatctaaaccgaaccgaaccgcacgtgatttttattttgga 13471340  T
Q  196 ttggatga-catttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||   ||| |||| |||| |||||||||||| |||| ||||||||    
T  13471341 tcggttgagttttttactttaaaatcgatccaaaccagaccgcgaacaccc 13471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 96 - 244
Target Start/End: Complemental strand, 253335 - 253188
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||  ||||||||||||||||||||||||| || | || | ||||| ||| ||||| |||| | ||| ||||||||||| ||||||||||||||    
T  253335 gatccaaatataaccgcatatgtttggatcggatcagtttggat-tattttagaattgtcattcaaaccaaaccgaaccgcatgttatttttattttgga 253237  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc 244  Q
    | |||||||||||    |||||||| || |||||||||||| |||||||    
T  253236 tcggatgacatttggtctcaaaaccaattcaaaccacaccgggaacacc 253188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 662523 - 662670
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||  ||||||||||||||||||||||||| || | || | ||||| ||| ||||| |||| | ||| ||||||||||| ||||||||||||||    
T  662523 gatccaaatataaccgcatatgtttggatcggatcagtttggat-tattttagaattgtcattcaaaccaaaccgaaccgcatgttatttttattttgga 662621  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc 244  Q
    | |||||||||||    |||||||| || |||||||||||| |||||||    
T  662622 tcggatgacatttggtctcaaaaccaattcaaaccacaccgggaacacc 662670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 848321 - 848468
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||  ||||||||||||||||||||||||| || | || | ||||| ||| ||||| |||| | ||| ||||||||||| ||||||||||||||    
T  848321 gatccaaatataaccgcatatgtttggatcggatcagtttggat-tattttagaattgtcattcaaaccaaaccgaaccgcatgttatttttattttgga 848419  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc 244  Q
    | |||||||||||    |||||||| || |||||||||||| |||||||    
T  848420 tcggatgacatttggtctcaaaaccaattcaaaccacaccgggaacacc 848468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 10636404 - 10636310
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacacc 235  Q
    ||||||| |||||||||||| | |||||  |||||| ||||||||||||||| ||||||||||||||| || |||||| |||| ||||| |||||    
T  10636404 ttttttagaatagtcatccacaccgaaccaaaccgcgtgtgatttttatttttgattggatgacattttacctcaaaatcgattcaaactacacc 10636310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 15266349 - 15266451
Alignment:
Q  140 attttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtga 239  Q
    ||||||||||||||||||||||| |||| || | | |||||||||||||||||  |||||||||| |||  | |||||| |||||||| || ||||||||    
T  15266349 attttttaaaatagtcatccaaaccgaattgtatcacatgtgatttttattttcaattggatgactttttgcctcaaaatcgatccaacccgcaccgtga 15266448  T
Q  240 aca 242  Q
    |||    
T  15266449 aca 15266451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 4602999 - 4603147
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| |||||||||||||   ||| || ||||||  |||| ||||||||| ||||| |||||||   ||||||||||||||||    
T  4602999 gatccaaaataaaccgcatatatttggatcggatcggatcggat-tttttttgaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga 4603097  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | || |||    ||||||||||||||||||  |||| ||||||||    
T  4603098 tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc 4603147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 11863981 - 11864057
Alignment:
Q  170 gaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccct 246  Q
    ||||||||||| ||||||||||||||| |  |||||||| || |||||||| ||||||||| ||||| |||||||||    
T  11863981 gaaccgcatgtaatttttattttggatcgattgacattttacctcaaaaccaatccaaaccgcaccgcgaacaccct 11864057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 32907309 - 32907457
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| |||||||||||||   ||| || ||||||  |||| |||||||||  |||| |||||||   ||||||||||||||||    
T  32907309 gatccaaaataaaccgcatatatttggatcggatcggatcggat-ttttttttaataatcatccaaactgaaccgaaccgcgcatgatttttattttgga 32907407  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | || |||    ||||||||||||||||||  |||| ||||||||    
T  32907408 tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc 32907457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 245
Target Start/End: Complemental strand, 12522920 - 12522773
Alignment:
Q  97 atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat 196  Q
    ||||||||||||| |||||| ||||||||| |||   ||  || ||| |||||||||||||| ||  ||||  ||| | | | |||||||||||||||||    
T  12522920 atccaaattaaactgcatatatttggatcgaatcggatcagatttttattaaaatagtcatctaagccgaatcgaatcacttatgatttttattttggat 12522821  T
Q  197 tggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
     |||||||| ||||  |||||| |||| ||||||  |||| ||||||||    
T  12522820 cggatgaca-ttaatctcaaaatcgattcaaaccgtaccgcgaacaccc 12522773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 5327555 - 5327503
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    |||||| |||||||||| |||||||||||||| | ||| | ||||||||||||    
T  5327555 tttttttaaatagtcattcaaatcgaactgaatcacatataatttttattttg 5327503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 26720886 - 26720846
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcg 136  Q
    ||||||||||||||||||||| |||||||| |||| |||||    
T  26720886 gatccaaattaaaccgcatatatttggatcagatcgattcg 26720846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 44902788 - 44902728
Alignment:
Q  177 atgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgt 237  Q
    |||||||||| |||||| || | |||| ||||  |||||||| ||||||||||||||||||    
T  44902788 atgtgattttaattttgaatcgaatgatattttgcttcaaaatcgatccaaaccacaccgt 44902728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 9280302 - 9280456
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  9280302 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 9280400  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagct 251  Q
    |||| |||  |||||| ||||||||||||||||||  |||| |||||||| |||||    
T  9280401 ttggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacacccctagct 9280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 34277336 - 34277485
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||| ||||||  ||||||||| || ||||| || |||||  ||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  34277336 gatccaaattaaacagcatatagttggatcggttcgattcgtatttttttagaaatactcatccaaaccgaaccgaaccgcatgtgatttttattttgga 34277435  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || |||||||||||||||||| ||||| ||||||||    
T  34277436 tcggttgacattttacctcaaaaccgatccaaaccgcaccgcgaacaccc 34277485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 24574886 - 24574738
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||| |    
T  24574886 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcatgtgatttttattttgta 24574788  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  24574787 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 24574738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 42414276 - 42414128
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||||||||||  ||||||||| |   ||||||| ||||||| |||| ||||||||| ||||| ||||||||||||||||||| |||| |    
T  42414276 gatccaaattaaaccgcatataattggatcggtttggttcgaat-ttttttagaatactcatccaaaccgaaccgaaccgcatgtgattttta-tttgaa 42414179  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccct 246  Q
    | || |||||||| || |||||||||||||||||| ||||| |||||||||    
T  42414178 tcggttgacattttacctcaaaaccgatccaaaccgcaccgcgaacaccct 42414128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 7612418 - 7612568
Alignment:
Q  94 ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    |||||||||||||||| |||||| |||||||| ||||| |||  || ||||||| ||||||||||| ||  |||| ||||||||||||||||||| ||||    
T  7612418 ctgatccaaattaaactgcatatatttggatctgatcagttcagat-ttttttagaatagtcatcccaacagaaccgaaccgcatgtgatttttactttg 7612516  T
Q  194 gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
     || ||||||||||| || ||||||  |||||||||| |||| |||||||||    
T  7612517 aatcggatgacattttacctcaaaattgatccaaaccgcaccatgaacaccc 7612568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 24319436 - 24319575
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  ||| | |||||||| || |  ||||||||| || |||||||||| ||||||||||||||||||    
T  24319436 gatccaaattaaaccgcatatatttggatcggatcggttcaattattttttgaattt-tcatccaaaccggactgaaccgcgtgtgatttttattttgga 24319534  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccg 236  Q
    |  |||||||||| || | |||| ||||||||||| |||||    
T  24319535 taagatgacattttacctaaaaatcgatccaaaccgcaccg 24319575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 42430380 - 42430528
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||| ||||| ||  |||  || ||||||| | || ||||||||| ||||| || |||||||| ||||||||||||||    
T  42430380 gatccaaattaaaccgcatatatttgtatcggttcggttcagat-ttttttagagtactcatccaaaccgaaccgatccgcatgtaatttttattttgga 42430478  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || ||||||||  | |||||||||||||||||| ||||| ||||||||    
T  42430479 tgggttgacattttgcctcaaaaccgatccaaaccgcaccgcgaacaccc 42430528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 23695637 - 23695515
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||||||||||           ||||||| |||||| ||||||| |||||||||||  |||||||||||||||||||    
T  23695637 gatccaaattaaaccgcatatatttggatcggat-----------ttttttagaatagtaatccaaaccgaactgaaccatatgtgatttttattttgga 23695549  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaac 229  Q
    | ||||||||||| || |||||| | ||||||||    
T  23695548 tcggatgacattttacctcaaaatccatccaaac 23695515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 3757336 - 3757468
Alignment:
Q  97 atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat 196  Q
    |||||||||||||||||||| |||||||||| ||  |||  || || |||| |||| |||| |||| ||||| |||| ||||||||||||||||||||||    
T  3757336 atccaaattaaaccgcatatatttggatcggttcggttcagat-ttctttagaatactcattcaaaccgaaccgaacggcatgtgatttttattttggat 3757434  T
Q  197 tggatgacatttaacttcaaaaccgatccaaacc 230  Q
     || ||||||||    ||||||||||||||||||    
T  3757435 cggttgacattttgtctcaaaaccgatccaaacc 3757468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 31567866 - 31567723
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||| ||||||||||| ||| |||| |||   |||| || |||||||||||||||| |||||     ||||| ||||||| ||||||||||||||    
T  31567866 gatccaaataaaaccgcatatatttagatcagattggttcggat-ttttttaaaatagtcacccaaa-----ctgaatcgcatgtaatttttattttgga 31567773  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | ||||||||||| || || || |||||||||||||||| || |||||||    
T  31567772 tcggatgacattttacctcgaagccgatccaaaccacactgtcaacaccc 31567723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 47310381 - 47310469
Alignment:
Q  118 tttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacattt 208  Q
    ||||||||||||| ||||  | |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  47310381 tttggatcggatcgattc--agattttttagaatagtcatccaaaccgaaccgaaccgcatgtgattcttattttagatcggatgacattt 47310469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 46251668 - 46251520
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| |||||||||||||   ||| || ||||||| ||||  |||||||| ||||| |||||||   ||||||||||||||||    
T  46251668 gatccaaaataaaccgcatatatttggatcggatcggatcggat-ttttttagaataaccatccaaaccgaaccgaaccgcgcatgatttttattttgga 46251570  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | || |||    ||||||||||||||||||  |||||||||||||    
T  46251569 tcggttcactttttctctcaaaaccgatccaaaccggaccgtgaacaccc 46251520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 47498575 - 47498427
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| |||||||||||||   ||| || ||||||| |||| ||||||||| ||||| |||||||   ||||||||||||||||    
T  47498575 gatccaaaataaaccgcatatatttggatcggatcggatcggat-ttttttagaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga 47498477  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | || |||    ||||||||||||||||||  |||| ||||||||    
T  47498476 tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc 47498427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 47975364 - 47975226
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||| ||||||||||| |||||||| ||||   ||  || | ||||| |||| ||||||||| | ||| ||||||||||||||||||||||||||    
T  47975364 gatccaaatcaaaccgcatatatttggatcagatcggatcagat-tcttttataataatcatccaaaccaaaccgaaccgcatgtgatttttattttgga 47975266  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacacc 235  Q
    | ||||||| ||| || | |||||  ||||||||| ||||    
T  47975265 tcggatgactttttacctaaaaactaatccaaaccgcacc 47975226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 40436790 - 40436937
Alignment:
Q  101 aaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaa-ccgcatgtgatttttattttggattgg 199  Q
    |||||||| ||||||| |||||||||||||  ||||| | ||||||| ||||||||| |||| |||| | || |||| |||| |||||| ||||||| ||    
T  40436790 aaattaaatcgcatatatttggatcggatcggttcgatt-ttttttagaatagtcattcaaa-cgaaatcaaaccgcgtgtggtttttactttggatcgg 40436887  T
Q  200 atgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttag 249  Q
    |||||||||  ||| |||| |||||||| || |||| ||| |||||||||    
T  40436888 atgacattttgcttaaaaaacgatccaatccgcaccatgaccacccttag 40436937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 7700661 - 7700726
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaa 162  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| |||||||| ||| |||||||||    
T  7700661 gatccaaattaaaccgcatatatttggatcggattgattcgaat-ttttttaacataatcatccaaa 7700726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 8738827 - 8738928
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||| ||||||||  ||||  |  |||||| ||||||||||||||         ||||||||| ||||||||||||||    
T  8738827 gatccaaattaaaccgcatatatttgaatcggatcggttcggtt--tttttagaatagtcatccaaa---------accgcatgtaatttttattttgga 8738915  T
Q  196 ttggatgacattt 208  Q
    ||| |||||||||    
T  8738916 ttgaatgacattt 8738928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 1576221 - 1576369
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  1576221 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 1576319  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  1576320 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 1576369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 27392962 - 27393110
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  27392962 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 27393060  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | |  |||  |||||| |||||||||||| |||||  |||| ||||||||    
T  27393061 tcgattgatttttaacctcaaaaccgatctaaaccggaccgcgaacaccc 27393110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 36482381 - 36482233
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  36482381 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcatgtgatttttattttgga 36482283  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||   ||  | | ||||||||||||||||| |||| ||||||||    
T  36482282 tcggttgattatttgcctaaaaaccgatccaaaccagaccgcgaacaccc 36482233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 8937495 - 8937355
Alignment:
Q  94 ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    |||||||||||||||| |||||| |||||||  ||| | |||  || ||||||| |||||| |||| ||   ||| |||||| |||||||||||||||||    
T  8937495 ctgatccaaattaaactgcatatatttggatatgattagttcagat-ttttttagaatagtgatcccaacaaaaccgaaccgaatgtgatttttattttg 8937397  T
Q  194 gattggatgacatttaacttcaaaaccgatccaaaccacacc 235  Q
    ||| ||||||||||| || ||||||| |||||||||| ||||    
T  8937396 gatcggatgacattttacctcaaaactgatccaaaccgcacc 8937355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 29987677 - 29987573
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaa 240  Q
    ||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||| || ||||  | ||||||||| | |||||| || || |||    
T  29987677 ttttttagaatagtcatccaaactgaactgaaccgtatgtgatttttattttggattggaagatatttttcctcaaaaccgtttcaaaccgcatcgcgaa 29987578  T
Q  241 caccc 245  Q
    |||||    
T  29987577 caccc 29987573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 323311 - 323162
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| |||||||||||||   ||| || ||||||| |||| ||||||||| ||||| |||||||   | ||||||||||||||    
T  323311 gatccaaaataaaccgcatatatttggatcggatcggatcggattttttttagaataatcatccaaaccgaaccgaaccgcgcataatttttattttgga 323212  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | || |||    ||||||||||||||||||  |||| ||||||||    
T  323211 tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc 323162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 31279892 - 31279729
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggat-caattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgg 194  Q
    |||||||||| || |||||||||||||||||| | |  |||| || ||||||| | || ||||||||| |||||  |||||||||| ||||||||||| |    
T  31279892 gatccaaattcaatcgcatatgtttggatcggtttcggttcggat-ttttttagagtactcatccaaaccgaacaaaaccgcatgtaatttttattttag 31279794  T
Q  195 attggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagctatatctta 259  Q
    || || ||||  ||  | ||||||||||| |||||  ||||| |||||||| || || |||||||    
T  31279793 atcggttgacggtttgcctcaaaaccgattcaaactgcaccgcgaacacccctatctctatctta 31279729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 36582234 - 36582091
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||| ||||||| ||||||||||     |||  || ||||||| |||| |||| |||| ||||| ||||| ||||| ||||||||||||||    
T  36582234 gatccaaattaaaacgcatatatttggatcgg-----ttctgat-ttttttagaatactcattcaaaccgaaccgaaccacatgtaatttttattttgga 36582141  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||| |||  | | |||||||||| ||||| |||||  |||||||    
T  36582140 tcggttgacgttttgccttaaaaccgatctaaaccgcaccgcaaacaccc 36582091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 14242956 - 14242860
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggatt-ggatgacatttaacttcaaaaccgatccaaaccacaccg 236  Q
    ||||||| |||| ||||||||| | ||||| ||| |||| |||||| |||||  | | ||||||| ||| || |||||||||||||||||| |||||    
T  14242956 ttttttagaatattcatccaaaccaaactgcaccacatgcgattttaattttttaatcggatgactttttacatcaaaaccgatccaaaccccaccg 14242860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 23222917 - 23222885
Alignment:
Q  97 atccaaattaaaccgcatatgtttggatcggat 129  Q
    |||||||||||||||||||| ||||||||||||    
T  23222917 atccaaattaaaccgcatatatttggatcggat 23222885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 23226974 - 23226926
Alignment:
Q  180 tgatttttattttggattggatgacatttaacttc-aaaaccgatccaa 227  Q
    ||||||||||||||||| ||||||||||| || || |||||||||||||    
T  23226974 tgatttttattttggatcggatgacattttacctcaaaaaccgatccaa 23226926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 23236127 - 23236079
Alignment:
Q  180 tgatttttattttggattggatgacatttaacttc-aaaaccgatccaa 227  Q
    ||||||||||||||||| ||||||||||| || || |||||||||||||    
T  23236127 tgatttttattttggatcggatgacattttacctcaaaaaccgatccaa 23236079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 7608011 - 7607863
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  7608011 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 7607913  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  7607912 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 7607863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 16705093 - 16704945
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| |||||  ||||||| |||||||||||||||||    
T  16705093 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccaaaccgcacgtgatttttattttgga 16704995  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  16704994 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 16704945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 10484107 - 10483978
Alignment:
Q  101 aaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattgga 200  Q
    |||||||||||||||| |||||||||||||| ||  | | ||||||| |||| ||||||||| |||||     | ||||||||||||||||| |||||||    
T  10484107 aaattaaaccgcatatatttggatcggatcagtttaatttttttttagaatattcatccaaaccgaac-----cacatgtgatttttattttagattgga 10484013  T
Q  201 tgacatttaacttcaaaaccgatccaaaccacacc 235  Q
    |||||||| || |||||||||||||||||| ||||    
T  10484012 tgacattttacctcaaaaccgatccaaaccgcacc 10483978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 30395942 - 30396090
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||| ||||||| |||||||||||||   ||  || ||||||| |||| ||||||||| |||||  | |||| ||||||||||||||||||    
T  30395942 gatccaaattaaatcgcatatatttggatcggatcggatcagat-ttttttagaataatcatccaaaccgaaccaagccgcgtgtgatttttattttgga 30396040  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||| ||| || ||||||||||||||||||  |||| ||||||||    
T  30396041 tcggttgactttttacctcaaaaccgatccaaaccggaccgcgaacaccc 30396090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 4463876 - 4463776
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaa 240  Q
    ||||||| |||||||||||||| | |||||||| |||||||||||||||||| ||| |||||||||||    ||||||| |||||||||| ||||| |||    
T  4463876 ttttttagaatagtcatccaaaccaaactgaacagcatgtgatttttattttagatcggatgacattttttctcaaaacagatccaaaccgcaccgcgaa 4463777  T
Q  241 c 241  Q
    |    
T  4463776 c 4463776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 21947079 - 21947227
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| ||||||| |||||   ||| || ||||||| |||| ||||||||| ||||| |||||||   ||||||||||||||||    
T  21947079 gatccaaaataaaccgcatatatttggattggatcggatcggat-ttttttagaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga 21947177  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    |||| | || |||    | ||||||||||||||||  |||| ||||||||    
T  21947178 ttggttcacttttgctctaaaaaccgatccaaaccggaccgcgaacaccc 21947227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 244
Target Start/End: Complemental strand, 3900853 - 3900707
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||| | |||| |||||||||||||  || |  |  || ||| |||||||||||||| ||||| ||| | ||||||||||||||||  ||    
T  3900853 gatccaaattaaactgaatatatttggatcggatcggtttggct--ttcttagaatagtcatccaaaccgaaccgaatcacatgtgatttttatttcaga 3900756  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc 244  Q
    |  ||| || |||  | ||||||||||| |||||| |||||||||||||    
T  3900755 tcagataacgttttgcctcaaaaccgattcaaaccgcaccgtgaacacc 3900707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 16110641 - 16110745
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaa 240  Q
    |||||||||||| ||||||||| | ||| ||||||||  ||||||||||||||||| || | || |||   |  ||||||||||||||||  ||||||||    
T  16110641 ttttttaaaataatcatccaaaccaaaccgaaccgcacatgatttttattttggatcggttcactttttcatagaaaaccgatccaaaccggaccgtgaa 16110740  T
Q  241 caccc 245  Q
    |||||    
T  16110741 caccc 16110745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 31945514 - 31945563
Alignment:
Q  198 ggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctt 247  Q
    ||||||| |||||| ||||||||||  |||||||||||| ||||||||||    
T  31945514 ggatgacttttaacctcaaaaccgaaacaaaccacaccgcgaacaccctt 31945563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 37282375 - 37282223
Alignment:
Q  97 atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat 196  Q
    |||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| ||||||||  |||||||||||||||||    
T  37282375 atccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacatgatttttattttggat 37282277  T
Q  197 tggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagc 250  Q
     || |||  |||||| ||||||||||||||||||  |||| |||||||| ||||    
T  37282276 cggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacacccctagc 37282223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 19636274 - 19636126
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  19636274 gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 19636176  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | |  ||| || |||||||||||||||| |  |||| ||||||||    
T  19636175 tcggttaattttttacctcaaaaccgatccaaatcggaccgcgaacaccc 19636126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 29283358 - 29283491
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||  ||| |||||||||| || ||||  || ||||||| ||||||||||||||  |||| ||||| | ||||||||||||||||||    
T  29283358 gatccaaattaaaccgtttatatttggatcgggtcgattcatat-ttttttagaatagtcatccaaactgaaccgaaccacgtgtgatttttattttgga 29283456  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaacc 230  Q
    | |||||| |||| || ||||||||||||||||||    
T  29283457 tcggatgatattttacctcaaaaccgatccaaacc 29283491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 25393043 - 25393168
Alignment:
Q  100 caaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattgg 199  Q
    ||||||||||||||||| ||||||||||||||| |      |||||||||||| | ||||||| | |||||     ||||||||||||||||||||| ||    
T  25393043 caaattaaaccgcatatatttggatcggatcaaat------ttttttaaaataattatccaaaccaaactg-----catgtgatttttattttggatcgg 25393131  T
Q  200 atgacatttaacttcaaaaccgatccaaaccacaccg 236  Q
    ||||| ||| |||||||||  ||| |||||| |||||    
T  25393132 atgactttttacttcaaaattgattcaaaccgcaccg 25393168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 1030858 - 1030989
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaa-ttcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgg 194  Q
    |||||||||||||||||||||  ||||||||| |    |||| || ||||||| || | ||||| ||| ||||| |||||||||||||||||||||||||    
T  1030858 gatccaaattaaaccgcatataattggatcggttttggttcggat-ttttttagaaaactcatctaaaccgaaccgaaccgcatgtgatttttattttgg 1030956  T
Q  195 attggatgacatttaacttcaaaaccgatccaa 227  Q
    || || |||||||| |  | |||||||||||||    
T  1030957 atcggttgacattttatctaaaaaccgatccaa 1030989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 25706671 - 25706820
Alignment:
Q  95 tgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgg 194  Q
    ||||||||| |||||||||||| |||||| |||| |   ||| || ||||||| |||| ||||||||| ||||| ||||||||  ||||||||||||| |    
T  25706671 tgatccaaaataaaccgcatatatttggaccggaccggatcggat-ttttttagaataatcatccaaaccgaaccgaaccgcacatgatttttattttag 25706769  T
Q  195 attggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    || || | || |||  | |||||| |||||||||||  |||| ||||||||    
T  25706770 atcggttcacttttcccctcaaaatcgatccaaaccgaaccgcgaacaccc 25706820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 27166977 - 27166889
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaac 229  Q
    |||||||||||||||||||||| ||||| ||| || |||| ||||||||||| ||| |||| | ||||   |||||||||||| |||||    
T  27166977 ttttttaaaatagtcatccaaaccgaaccgaatcggatgtaatttttattttagatcggataatattttgtttcaaaaccgatacaaac 27166889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 41198226 - 41198078
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||| ||||||| |||||||| ||||| |||| || ||| ||| |||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  41198226 gatccaaattaaatcgcatatatttggatcagatcagttcggat-tttgttagaatactcatccaaaccgaaccgaaccgcatgtgatttttattttgga 41198128  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || |||||| ||||||||||  ||||| ||||||||    
T  41198127 tcggttgacattttacctcaaaatcgatccaaactgcaccgcgaacaccc 41198078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 14462079 - 14462227
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||| |||||||||  |||| || |||||||| ||| ||||||||| ||||| |||||||| || ||||||||||||||    
T  14462079 gatccaaattaaaccgcatatatttagatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtaatttttattttgga 14462177  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||| ||||  |||||||    
T  14462178 tcggttgatttttaacctcaaaaccgatccaaaccagaccgcaaacaccc 14462227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 24615165 - 24615308
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||| ||  |||| || ||||||| |||| ||||||||| |||||     ||||||||||||||||||| ||    
T  24615165 gatccaaattaaaccgcatatatttggatcggctcggttcggat-ttttttagaatactcatccaaaccgaac-----cgcatgtgatttttattttaga 24615258  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || |||||||||||||||||  |||| |||||||||    
T  24615259 tcggttgacattttacctcaaaaccgatccaaactgcaccatgaacaccc 24615308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 35671826 - 35671681
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||| |||||| |||||||||| ||  |||| || ||||||| |||| |||| |||||||||| ||| ||||| ||||||||||||| ||    
T  35671826 gatccaaattaaactgcatatatttggatcggttcggttcggat-ttttttagaatactcattcaaatcgaaccgaatcgcatatgatttttattttaga 35671728  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaaca 242  Q
    | || |||||||| || ||||||| |||||||| | ||||| |||||    
T  35671727 tcggttgacattttacctcaaaactgatccaaatcgcaccgcgaaca 35671681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 28655955 - 28656087
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||| ||||||||   |||  || ||||||| |||||||||| ||||||||| |||| ||||||||||||||||||| |    
T  28655955 gatccaaattaaaccgcatatattttgatcggattggttctgat-ttttttagaatagtcatcaaaatcgaaccgaactgcatgtgatttttattttgaa 28656053  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaac 229  Q
    | |||||||||||    ||||||||||| |||||    
T  28656054 tcggatgacattttgtctcaaaaccgattcaaac 28656087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 5559762 - 5559915
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaata----ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattt 191  Q
    ||||||||||||||| ||||| |||||||||||||  ||||  |     |||||||| ||| ||||||||||||||| |||||||| |||||||||||||    
T  5559762 gatccaaattaaaccacatatatttggatcggatcggttcggttcggatttttttaacataatcatccaaatcgaaccgaaccgcacgtgatttttattt 5559861  T
Q  192 tggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | ||| || |||  ||| || ||||||||||||||||||  |||| ||||||||    
T  5559862 tagatcggttgatttttgacctcaaaaccgatccaaaccggaccgcgaacaccc 5559915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 11619732 - 11619599
Alignment:
Q  97 atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat 196  Q
    ||||||||||||||| |||| ||||||| | |||  ||| ||| ||||||||||||||| |||||| |||||     | |||||||||||||||||||||    
T  11619732 atccaaattaaaccgtatatatttggattgaatcggttc-aattttttttaaaatagtcgtccaaaccgaac-----cacatgtgatttttattttggat 11619639  T
Q  197 tggatgacatttaacttcaaaaccgatccaaaccacaccg 236  Q
     ||||||||||   | ||||||| |||||||||| |||||    
T  11619638 cggatgacattctgcctcaaaactgatccaaaccgcaccg 11619599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 36851118 - 36851168
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattt 191  Q
    ||||||||||||||||||||||   ||||||| | ||||||||||||||||    
T  36851118 ttttttaaaatagtcatccaaacttaactgaatcacatgtgatttttattt 36851168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 38856216 - 38856258
Alignment:
Q  142 tttttaaaatagtcatccaaatcgaactgaaccgcatgtgatt 184  Q
    ||||||| |||||||||||||||||| |||||| |||||||||    
T  38856216 tttttaatatagtcatccaaatcgaattgaaccacatgtgatt 38856258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 535067 - 534983
Alignment:
Q  145 ttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaac 229  Q
    |||||| |||||||| || | ||||||| |  | |||||||||||||| ||||||||||| ||| |||| |||| |||| |||||    
T  535067 ttaaaacagtcatccgaaccaaactgaatcaaacgtgatttttattttagattggatgactttttactttaaaatcgatgcaaac 534983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 27111041 - 27111191
Alignment:
Q  94 ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    |||||||||||||||||||||||  ||||||||| ||  |||| || ||||||| |||| ||||||||| ||||| |||||| |||||||||||||||||    
T  27111041 ctgatccaaattaaaccgcatataattggatcggttcggttcggat-ttttttagaatactcatccaaaccgaaccgaaccgtatgtgatttttattttg 27111139  T
Q  194 gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    ||| || |||||||| || ||||||| |||||||||| |||||  |||||||    
T  27111140 gatcggttgacattttacctcaaaactgatccaaaccgcaccgcaaacaccc 27111191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 35449352 - 35449202
Alignment:
Q  100 caaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattgg 199  Q
    ||||||||||||||||| |||||||||| ||  ||| ||| ||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||    
T  35449352 caaattaaaccgcatatatttggatcggttcggttcaaat-tttttaaaaatactcatccaaaccgaaccgaaccgcatgtgatttttattttggatcgg 35449254  T
Q  200 atgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagct 251  Q
     |||||||| || |||||||  ||||||||| ||||  |||||||| |||||    
T  35449253 ttgacattttacctcaaaactaatccaaaccgcaccacgaacacccctagct 35449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 40044554 - 40044697
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||||| ||||||||||  |||||||| ||| |||||||||||| |||||     ||||||||||||||||||||||    
T  40044554 gatccaaattaaaccgcatatatttggataggatcaattcagatattttt-aaattagtcatccaaaccgaac-----cgcatgtgatttttattttgga 40044647  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | |||||||||||  | |||||| |||| |||||| ||||| ||||||||    
T  40044648 tcggatgacattttgcctcaaaatcgattcaaaccgcaccgcgaacaccc 40044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 40987717 - 40987865
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||| |||||||  |||  || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  40987717 gatccaaattaaaccgcatatatttgggtcggatcggttcagat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga 40987815  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||  |||||| ||||||||||||||||||  |||| ||||||||    
T  40987816 tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 40987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 1495596 - 1495448
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||| ||  || | || ||||||| |||| ||||||||| ||||| ||||| |||||||| ||||||| |||    
T  1495596 gatccaaattaaaccgcatatatttggatcggttcggtttggat-ttttttagaatactcatccaaaccgaaccgaaccacatgtgatatttatttcgga 1495498  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || ||||||| ||||||||||  |||| ||||||||    
T  1495497 tcggttgacattttacctcaaaactgatccaaaccggaccgcgaacaccc 1495448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 17342186 - 17342039
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| || |||||||||   ||| ||| ||||||| |||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  17342186 gatccaaattaaaccgcatatattcggatcggataggttc-aat-ttttttagaatagtcaaccaaatcaaatcgaaccgcatgtgatttttattttgga 17342089  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    ||||| |||||||    |||||||  ||| ||| | ||||||||||||||    
T  17342088 ttggacgacattttgtctcaaaactaatctaaatcgcaccgtgaacaccc 17342039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 41061621 - 41061768
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||| ||||||  ||||||||| ||   ||  || |||||||||||| |||||||||||||||  |||| |||||||||||||||||| |    
T  41061621 gatccaaattaaacagcatataattggatcggttcggatcagat-ttttttaaaatactcatccaaatcgaacc-aaccacatgtgatttttattttgaa 41061718  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || | |||||||||||||||| ||||| ||||||||    
T  41061719 tcggttgacattttaccttaaaaccgatccaaaccgcaccgcgaacaccc 41061768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 33745972 - 33745832
Alignment:
Q  94 ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    ||||| ||||||||||||||||| ||||||||||  |  |||| ||  |||||| ||||||||||||||  |||  |||||||||| |||||||||||||    
T  33745972 ctgattcaaattaaaccgcatatatttggatcggtccgtttcggat--tttttagaatagtcatccaaactgaatcgaaccgcatgcgatttttattttg 33745875  T
Q  194 gattggatgacatttaacttcaaaaccgatccaaaccacaccg 236  Q
     ||  ||||| |||| || |||||| |||| |||||| |||||    
T  33745874 aatcagatgatattttacctcaaaatcgatgcaaaccgcaccg 33745832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 42715834 - 42715745
Alignment:
Q  141 ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaacc 230  Q
    ||||| |||||| |||||||||   ||| ||||||||||||| ||||||||| ||| || ||||||||  | ||||||||||||||||||    
T  42715834 tttttaaaaataatcatccaaacaaaaccgaaccgcatgtgaattttattttagatcggttgacattttgcctcaaaaccgatccaaacc 42715745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 26639927 - 26639796
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||| |||||||||  ||||| ||| |||||||||  || | |||||||| | |||||||||| ||| | || |||||||||| | ||||||||||| ||    
T  26639927 gatcaaaattaaacttcatatatttagatcggatcggtttggatattttt-agaatagtcatctaaaccaaattgaaccgcatataatttttattttaga 26639829  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaa 228  Q
    | |||||| |||| |  ||||||||||||||||    
T  26639828 tcggatgatattttaactcaaaaccgatccaaa 26639796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 235
Target Start/End: Original strand, 4986485 - 4986623
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||| ||||| |||||||  |||   ||| ||| ||||||| |||| |||| |||| |||||  |||||||||| ||||||||||| ||    
T  4986485 gatccaaattaaaccacatatatttggatttgattggttcaaat-ttttttagaataatcattcaaaccgaaccaaaccgcatgtaatttttattttaga 4986583  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacacc 235  Q
    | | ||||||||| |  |||||| |||| |||||| ||||    
T  4986584 tcgaatgacattttagctcaaaatcgattcaaaccgcacc 4986623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 13555147 - 13555277
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||| |||||||||||||||| |||| |  |||||  || |||| |||||||| ||| ||||||||| ||||| ||||||||  | ||||||||||||||    
T  13555147 gatctaaattaaaccgcatatatttgaa--ggatcggtttgaat-ttttttaacataatcatccaaaccgaaccgaaccgcacataatttttattttgga 13555243  T
Q  196 ttggatgac-atttaacttcaaaaccgatccaaa 228  Q
    | || ||||  ||| || |||||| |||||||||    
T  13555244 tcggttgacttttttacctcaaaatcgatccaaa 13555277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 248
Target Start/End: Complemental strand, 21352028 - 21351877
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||||||||||  ||||||| | ||  || | || ||||||| |||| ||||||||  ||||| |||| |||||||||||||||||||||    
T  21352028 gatccaaattaaaccgcatataattggatcagttctgtttggat-ttttttagaatattcatccaagccgaaccgaactgcatgtgatttttattttgga 21351930  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctta 248  Q
    | || |||||||| || |||||||||||||||||| ||||| |||||||||||    
T  21351929 tcggttgacattttacctcaaaaccgatccaaaccgcaccgcgaacaccctta 21351877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 10997612 - 10997765
Alignment:
Q  94 ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg 193  Q
    |||||||||||| ||| |||||| |||||||||||||  |||| |  ||||||| |||||||||||||| ||||||||||  |||||||||||||||||     
T  10997612 ctgatccaaatttaactgcatatatttggatcggatcggttcggac-ttttttagaatagtcatccaaaccgaactgaactacatgtgatttttatttta 10997710  T
Q  194 gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctta 248  Q
    |||||||||||||||  | ||||||||||| ||||   ||| | |||||||||||    
T  10997711 gattggatgacattttgcctcaaaaccgattcaaaatgcactgcgaacaccctta 10997765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 42295523 - 42295366
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||||||||| |||||| |||| || || ||  |||  || ||||||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||    
T  42295523 gatccaaattaaactgcatatatttgaattggctcggttcagat-ttttttataatactcatccaaaccgaaccgaaccacatgtgatttttattttgga 42295425  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagctata 254  Q
    | || || ||||| || ||||||| |||||||||| |||||||||||||| ||| ||||    
T  42295424 tcggttggcattttacctcaaaactgatccaaaccgcaccgtgaacacccctagttata 42295366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 29772585 - 29772735
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||| ||||| || | || ||||||| |||||||||||||| ||||  ||||||||| |||||||||||||| |    
T  29772585 gatccaaattaaaccgcatatatttggatcagatcagtttggat-ttttttagaatagtcatccaaaccgaatcgaaccgcatatgatttttattttgta 29772683  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctt 247  Q
    ||| ||||| ||| |  |||||| | ||| ||||| ||||| ||||| ||||    
T  29772684 ttgaatgactttttatctcaaaatcaatctaaaccgcaccgcgaacatcctt 29772735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 235
Target Start/End: Original strand, 22596730 - 22596867
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| |||||||||| ||  |||||||  |||||| |||| | ||||||| ||||||||||||||  | ||||||||||| ||    
T  22596730 gatccaaattaaaccgcatatatttggatcggttcggttcgaat--tttttagaatacttatccaaaccgaactgaaccgcacataatttttattttaga 22596827  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacacc 235  Q
    | || |||| |||  | |||||||||||||||||| ||||    
T  22596828 tcggttgacgttttgcctcaaaaccgatccaaaccgcacc 22596867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 16672390 - 16672518
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||||| ||     |||| || |||||||| ||| ||||||||| ||||| ||||||||  ||||||||||||||||    
T  16672390 gatccaaattaaaccgcatatatttggattgg-----ttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacatgatttttattttgga 16672483  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaacc 230  Q
    | || |||  |||||| ||||||||||||||||||    
T  16672484 taggttgatttttaacctcaaaaccgatccaaacc 16672518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 18511950 - 18512098
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    |||||||| |||||||||||| |||||||||||||   ||| || ||||||  |||| ||||||||| ||||| |||||||   ||||||||||||||||    
T  18511950 gatccaaaataaaccgcatatatttggatcggatcggatcggat-tttttttgaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga 18512048  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || | || |||    ||||||||||||||||||  |||| ||||||||    
T  18512049 tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc 18512098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 39989200 - 39989346
Alignment:
Q  98 tccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggatt 197  Q
    ||||||||||||| ||||| |||||||||||||  ||||||| |||||||  ||||| || |||| | ||| |||| | |||| |||||||||||  |||    
T  39989200 tccaaattaaaccacatatatttggatcggatcggttcgaat-ttttttagtatagttattcaaaccaaaccgaactgtatgtaatttttattttaaatt 39989298  T
Q  198 ggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | ||||||||| | || ||||| |||| ||||| || || ||||||||    
T  39989299 gaatgacattttattttaaaactgatctaaaccgcagcgcgaacaccc 39989346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 19968630 - 19968681
Alignment:
Q  179 gtgatttttattttggattggatgacatttaacttcaaaaccgatccaaacc 230  Q
    ||||||||||||||||||||||| || |||  | ||||||||||||||||||    
T  19968630 gtgatttttattttggattggataactttttgcctcaaaaccgatccaaacc 19968681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 994 - 846
Alignment:
Q  96 gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga 195  Q
    ||||||||||||||||||||| ||||||| || ||  |||  || ||||||| |||| ||||||||| ||||| |||| ||||||| | ||||||| |||    
T  994 gatccaaattaaaccgcatatatttggattggttcggttctgat-ttttttagaatactcatccaaaccgaaccgaactgcatgtggtatttatttcgga 896  T
Q  196 ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc 245  Q
    | || |||||||| || ||||||||||||||||||  |||||||||||||    
T  895 tcggttgacattttacctcaaaaccgatccaaaccggaccgtgaacaccc 846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 5955 - 6019
Alignment:
Q  165 gaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaac 229  Q
    |||||||| ||||||||||||||||||| ||| |||||| |||| || |||||| ||||| ||||    
T  5955 gaactgaatcgcatgtgatttttattttagatcggatgatattttacctcaaaatcgatctaaac 6019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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