View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_15 (Length: 274)
Name: NF2396_high_15
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 11652906 - 11652655
Alignment:
| Q |
1 |
tatttcagcctacaatttatggcttggactaggaatttttgttattgtcgaagtaagtattaacacatagcaagaaattgatgttgatactatataatga |
100 |
Q |
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| T |
11652906 |
tatttcagactacaatttatggcttggactaggaatttttgttattgtcgaagtaagtattaacacacagcaagaaattgatgttgatactatataatga |
11652807 |
T |
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| Q |
101 |
attttatttgctttctcaacaatttaagttggtacctgttttatttttcttttcttcaaaaagtcaggttttaatcttttaaaatagtccctataaaaag |
200 |
Q |
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| T |
11652806 |
attttatttgctttctcaacaatttaagttggtacctgttttatttttcttttcttcaaaaagtcaggtgtttatcttttaaaatagtccctataaaaag |
11652707 |
T |
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| Q |
201 |
tcaaagagggacttagaatgtataaaatttatttaagaactaaacttgaaag |
252 |
Q |
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| T |
11652706 |
ccaaagagggacttagaatgtataaaatttatttaagaactaaacttgaaag |
11652655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 42024001 - 42023930
Alignment:
| Q |
181 |
aaaatagtccctataaaaagtcaaagagggacttagaatgtataaaatttatttaagaactaaacttgaaagt |
253 |
Q |
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|||||||||| ||||||||| |||| ||||||| | |||| ||||||||| | || | ||||||||||||||| |
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| T |
42024001 |
aaaatagtccatataaaaag-caaatagggactaaaaatgaataaaatttttgtatgtactaaacttgaaagt |
42023930 |
T |
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