View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_17 (Length: 258)
Name: NF2396_high_17
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 11125380 - 11125246
Alignment:
| Q |
60 |
aacaaaaacataactataagacaaccaaattgtatactttcgcatataataatataacactttaacattctttctcatttttgtaaaagaaaacataaaa |
159 |
Q |
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| T |
11125380 |
aacaaaaacataactataagacaaccaaattgtatactttcgcatataataatataacactttaacattctttctcatttttgtaaaagaaaacataaaa |
11125281 |
T |
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| Q |
160 |
cannnnnnnnngaaggaagaaaacatgttttgtat |
194 |
Q |
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| T |
11125280 |
cttttttttttgaaggaagaaaacatgttttgtat |
11125246 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 13978442 - 13978474
Alignment:
| Q |
7 |
agtaataatgttagaaaagaaaagtcattgaat |
39 |
Q |
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| T |
13978442 |
agtaataatgtgagaaaagaaaagtcattgaat |
13978474 |
T |
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