View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2396_high_19 (Length: 249)

Name: NF2396_high_19
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2396_high_19
NF2396_high_19
[»] chr2 (3 HSPs)
chr2 (1-240)||(11730509-11730749)
chr2 (105-143)||(19204394-19204432)
chr2 (105-194)||(28617245-28617334)
[»] chr8 (5 HSPs)
chr8 (105-167)||(41657647-41657709)
chr8 (112-167)||(39415822-39415877)
chr8 (105-164)||(41291494-41291553)
chr8 (116-169)||(39670890-39670944)
chr8 (58-167)||(42964778-42964886)
[»] chr7 (5 HSPs)
chr7 (106-188)||(24423406-24423487)
chr7 (108-166)||(6241127-6241185)
chr7 (105-167)||(43638951-43639012)
chr7 (116-169)||(49142921-49142974)
chr7 (105-169)||(7715429-7715493)
[»] chr1 (5 HSPs)
chr1 (116-167)||(11451855-11451906)
chr1 (105-201)||(11661247-11661344)
chr1 (105-194)||(26761225-26761314)
chr1 (105-194)||(44529223-44529311)
chr1 (105-161)||(9433792-9433848)
[»] chr6 (2 HSPs)
chr6 (105-167)||(342940-343002)
chr6 (105-169)||(30326664-30326728)
[»] chr3 (1 HSPs)
chr3 (105-195)||(42461358-42461447)
[»] chr4 (1 HSPs)
chr4 (105-169)||(42098911-42098975)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11730509 - 11730749
Alignment:
Q  1 aaaatttacgatcttattaacaagtgtccttagaagttagagcattgttaaattgtcaaaatagaaataattgatgacttttacatagaaaaaa-ttann 99  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||      
T  11730509 aaaatttacgatcttattaacaagtgtccttagaagttagaacattgttaaattgtcaaaatagaaataattgataacttttacatagaaaaaaattatt 11730608  T
Q  100 nnnnnatgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgttagcatttttcta 199  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  11730609 tttttatgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatgaagttttcaaaggacatttgttagcatttttcta 11730708  T
Q  200 aaatttatgatagcttattgagtttataaattattttcttc 240  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11730709 aaatttatgatagcttattgagtttataaattattttcttc 11730749  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 19204432 - 19204394
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaa 143  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  19204432 atgtttcaatgtgttgaatacataaatctcaagataaaa 19204394  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 28617334 - 28617245
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgttagcattt 194  Q
    ||||| |||||||||  |||||||||| | || |||| || |||||||||||||| |||||||||  || || ||||| | |||||||||    
T  28617334 atgttgcaatatgttttatacataaattttaaaataagattttcactttaaacttcttatcaaatgccctaaagacatatattagcattt 28617245  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 41657647 - 41657709
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaa 167  Q
    |||||| |||||||| |||||||||||||||| ||||||| | ||||||||| ||||||||||    
T  41657647 atgttttaatatgttaaatacataaatctcaaaataaaatctccactttaaattttttatcaa 41657709  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 39415877 - 39415822
Alignment:
Q  112 aatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaa 167  Q
    ||||| |||||||||||||| | ||||||||||||  ||||||||||| |||||||    
T  39415877 aatatattgaatacataaattttaatataaaatgtatactttaaacttattatcaa 39415822  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 41291494 - 41291553
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttat 164  Q
    |||||||||||||||||||| | ||||||| ||||||||| |  ||||||||||| ||||    
T  41291494 atgtttcaatatgttgaatatacaaatctccatataaaatttatactttaaacttcttat 41291553  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 39670944 - 39670890
Alignment:
Q  116 tgttgaatacataaatctcaa--tataaaatgttcactttaaactttttatcaaat 169  Q
    |||||||||||||||||||||  || ||||| |||||||||||||| |||||||||    
T  39670944 tgttgaatacataaatctcaaggtaaaaaat-ttcactttaaacttcttatcaaat 39670890  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 42964886 - 42964778
Alignment:
Q  58 aaaatagaaataattgatgacttttacatagaaaaaattannnnnnnatgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaac 157  Q
    ||||| |||||||||||| ||||| |  |||||||| |||       |||||||||| ||||||||||| || || ||| ||||||| | ||||||||||    
T  42964886 aaaatggaaataattgataactttcatgtagaaaaagttattttttgatgtttcaatgtgttgaatacacaa-tcccaagataaaatttccactttaaac 42964788  T
Q  158 tttttatcaa 167  Q
    || |||||||    
T  42964787 ttcttatcaa 42964778  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 24423487 - 24423406
Alignment:
Q  106 tgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgtta 188  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||| ||| ||||| ||||||||| |||  || ||||||||||    
T  24423487 tgtttcaatgtgttgaatacataaatctcaagataaaattttcaattt-aacttcttatcaaatgtccttagaacatttgtta 24423406  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 6241127 - 6241185
Alignment:
Q  108 tttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatca 166  Q
    ||||||| |||||||||||||||| | || ||||||| |||| ||||||||||||||||    
T  6241127 tttcaatctgttgaatacataaattttaaaataaaattttcattttaaactttttatca 6241185  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 43639012 - 43638951
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaa 167  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||  | |||||||||||||||    
T  43639012 atgtttcaatatattgaatacacaaatctcaaaataaaat-ttctatataaactttttatcaa 43638951  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 49142921 - 49142974
Alignment:
Q  116 tgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaat 169  Q
    ||||||||| | |||||| || ||||||||| ||||||||| ||||||||||||    
T  49142921 tgttgaataaacaaatcttaaaataaaatgtgcactttaaattttttatcaaat 49142974  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 7715493 - 7715429
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaat 169  Q
    |||||| |||||||||||||||||||| | || |||| || |  | |||||||||||||||||||    
T  7715493 atgtttaaatatgttgaatacataaatttaaagataagatttctattttaaactttttatcaaat 7715429  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 11451906 - 11451855
Alignment:
Q  116 tgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaa 167  Q
    |||||||||||||| |||||||||||||| |  |||||||||||||||||||    
T  11451906 tgttgaatacataactctcaatataaaatttctactttaaactttttatcaa 11451855  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 11661247 - 11661344
Alignment:
Q  105 atgtttcaatatgtt-gaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgttagcatttttctaaa 201  Q
    |||||||||| |||| ||||||| ||||||||| ||||||  || || |||||||||||||||||| ||   |||||| ||||||| |||| ||||||    
T  11661247 atgtttcaatgtgttagaatacacaaatctcaagataaaaattttaccttaaactttttatcaaatatcattaggacacttgttagtatttatctaaa 11661344  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 26761225 - 26761314
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgttagcattt 194  Q
    |||||| ||| ||||||||||| |||| | || ||||||| |||| ||||||| | |||||||||  || || | |||||||||||||||    
T  26761225 atgttttaatgtgttgaatacacaaattttaagataaaattttcattttaaacctcttatcaaatgccctaaaggcatttgttagcattt 26761314  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 44529311 - 44529223
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgttagcattt 194  Q
    |||||| ||||||||||||||| || | | || ||||||  | |||||||||||| ||||||||| ||| || |||| ||||||||||||    
T  44529311 atgttttaatatgttgaatacacaacttttaagataaaacttccactttaaacttcttatcaaatgtcctaa-gacacttgttagcattt 44529223  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 9433848 - 9433792
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttt 161  Q
    |||||||||| ||||||||||| |||||  || | |||||||||||||| |||||||    
T  9433848 atgtttcaatgtgttgaatacacaaatccgaagacaaaatgttcactttgaactttt 9433792  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 343002 - 342940
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaa 167  Q
    |||||||||| ||||||||||||||||  ||| | ||||| |||| |||||||||||||||||    
T  343002 atgtttcaatgtgttgaatacataaattccaaaacaaaattttcattttaaactttttatcaa 342940  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 30326728 - 30326664
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaat 169  Q
    |||||||||| ||||||||||| ||||| ||| ||||||| | || ||||||||| |||||||||    
T  30326728 atgtttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttcttatcaaat 30326664  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 42461358 - 42461447
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaatttccaaaggacatttgttagcatttt 195  Q
    |||||||||| ||||||||| | |||||| || ||||| | |||||||||||||||||||||  | | | || ||||||||||||||||||    
T  42461358 atgtttcaatgtgttgaatatacaaatcttaagataaatttttcactttaaactttttatcacgtgttctaa-gacatttgttagcatttt 42461447  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 42098975 - 42098911
Alignment:
Q  105 atgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttatcaaat 169  Q
    |||||||||||| ||||||| | |||||  || ||||||| |||| ||||||||| |||||||||    
T  42098975 atgtttcaatatattgaatatacaaatcctaaaataaaattttcattttaaacttcttatcaaat 42098911  T

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