View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_2 (Length: 620)
Name: NF2396_high_2
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 610
Target Start/End: Complemental strand, 21460420 - 21459826
Alignment:
| Q |
19 |
ataatcatcatatatctcaagcacagacggtgaaggaagctaagtaattataactaagttatgatcctagcatctggttatacattagattttattataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21460420 |
ataatcatcatatatctcaagcacagacggtgaaggaagctaagtaattataactaagttatgatcctagcatctgattatacattagattttattataa |
21460321 |
T |
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| Q |
119 |
tttgcaactgatactcatgcaaattttcttatatatataatcaaatctaagtnnnnnnn---gaaacaatactaatgcataagcataaattacttctgag |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21460320 |
tttgtaactgatactcatgcaaattttcttatatatataatcaaatctaagtaaaaaaaaaagaaacaatactaatgcataagcataaattacttctgag |
21460221 |
T |
|
| Q |
216 |
tctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatctcaaacctgccattgagttctacta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21460220 |
tctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttggaaggaggattttaccatcccaaacctgccattgagttctacta |
21460121 |
T |
|
| Q |
316 |
gataaattatgttcagtgagtcatggaaacaagaaaaatgataaattgaaaaccaaaccataaagctttacactcatgcatatagaattgttagatgggg |
415 |
Q |
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| T |
21460120 |
gataaattatgttcagtgagtcatggaaacaagaaaaatgataaattgaaaaccaaaccataaagctttacactcatgcatatagaattgttagatgggg |
21460021 |
T |
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| Q |
416 |
tttgaggttcaaactctcaacatgtactattatgtattgtctggtgctacactataagaattcaccttcatatctcactcatcgctaaacagcctaacaa |
515 |
Q |
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| T |
21460020 |
tttgaggttcaaactctcaacatgtactattatgtattgtctggtgctgcactataagaattcaccttcatatctcactcatcgctaaacaccctaacaa |
21459921 |
T |
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| Q |
516 |
ccaccccacgtatgattcatcagcaacaaccttcaaagcaatttatcttagtcaatatgttcatgtgttttcctctacctcattattcttctcac |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21459920 |
ccaccccacgtatgattcatcagcaacaaccttcaaagcaatttatcttagtcaatatgttcatgtgttttcctctacctcattattcttttcac |
21459826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 501 - 563
Target Start/End: Original strand, 38913523 - 38913585
Alignment:
| Q |
501 |
taaacagcctaacaaccaccccacgtatgattcatcagcaacaaccttcaaagcaatttatct |
563 |
Q |
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| T |
38913523 |
taaacaccctaacaaccaccccacatatgattcatcagtaacaaccttcaaagcaatttatct |
38913585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 42949950 - 42949865
Alignment:
| Q |
124 |
aactgatactcatgcaaattttcttatatatataatcaaatctaagtnnnnnnngaaacaatactaatgcataagcataaattacttc |
211 |
Q |
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| T |
42949950 |
aactgatactcatgcaaattttat--tatatataatcaaatctcagtaataaaggaaacaacactaatgcataagcatacatttcttc |
42949865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 42949558 - 42949504
Alignment:
| Q |
315 |
agataaattatgttcagtgagtcatggaaacaagaa-aaatgataaattgaaaac |
368 |
Q |
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| T |
42949558 |
agataaatcgtgttcagtaagtcatggaaacaagaacaagtgataaattgaaaac |
42949504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 2851563 - 2851485
Alignment:
| Q |
212 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatc |
290 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||| | |||| ||||||| |||| |
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| T |
2851563 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgattttatcatc |
2851485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 2903595 - 2903517
Alignment:
| Q |
212 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatc |
290 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||| | |||| ||||||| |||| |
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| T |
2903595 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgattttatcatc |
2903517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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