View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_3 (Length: 531)
Name: NF2396_high_3
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 515
Target Start/End: Original strand, 51877683 - 51878192
Alignment:
| Q |
11 |
cagagagggacaaagagacacgcaaatnnnnnnnnnnnngtatctggtcagtaaaagtgaatgataacaataattggtatcatgcatgtagagaatttgt |
110 |
Q |
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| T |
51877683 |
cagagagggacaaagagacacgcaaatagagagagagaggtatctggtcagtaaaagtgaatgataacaataattggtatcatgcatgtagagaatt-gt |
51877781 |
T |
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| Q |
111 |
attgtatgtaagtatgtagtgtagaatgctttggttggaattggaggggccatgttaggaactgcacaaacaaaatccagctattattgcatctgtctac |
210 |
Q |
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| T |
51877782 |
attgtatgtaagtatgtagtgtagaatgctttggttggaattggaggggccatgttaggaactgcacaaacaaaatccagctattattgcatctgtctac |
51877881 |
T |
|
| Q |
211 |
ttctcacattacaaataatttggaacagtgtttctgcaatctacaatgccacttccccaccacctcaggctaccctccaattcttttttatctattatta |
310 |
Q |
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| T |
51877882 |
ttctcacattacaaataatttggaacagtgtttctgcaatctacaatgccacttccccaccacctcaggctaccctccaattcttttttatctattatta |
51877981 |
T |
|
| Q |
311 |
tcattatgaatagggttttcgannnnnnngcagtactcacacaatcacttccaacttatc------atcaatattcaatcaagctgattaaacggttcaa |
404 |
Q |
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| T |
51877982 |
tcattatgaatagggttttcgatttttttgcagtactcacacaatcacttccaacttatcatcaatatcaatattcaatcaagctgattaaacggttcaa |
51878081 |
T |
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| Q |
405 |
aatttagtatagattttcattatttttcttaaatataaaatatcaatcaaggtagaaatttggacccttcaatctataacactcaccaataatgactttt |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
51878082 |
aatttagtatagattttcattatttttcttaaatataaaatatcaatcaagttagaaatttggacccttcaatctatatcactcaccaataatgcctttt |
51878181 |
T |
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| Q |
505 |
ctgttgaagtt |
515 |
Q |
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| T |
51878182 |
atggtgaagtt |
51878192 |
T |
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