View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_7 (Length: 368)
Name: NF2396_high_7
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 12273800 - 12274112
Alignment:
| Q |
9 |
agcacagacacgtttagattatgcatgttgttgcagtgtctgacgcaaaggacacgtgtcggacaagacagtctaaataaaattgttttttaatgt---- |
104 |
Q |
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| T |
12273800 |
agcacagacacgtttagactatgcatgttgttgcagtgtctgacgcaaaggatacgtgtcggacaagacagtctaaataaaattgttttttaatgtactt |
12273899 |
T |
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| Q |
105 |
-------ctttaaaccggtgtccaacacctatataacacttatatgtgtatgtggtgtgtcagttgagtaatgtaaaagacaaaaaatagaggtgaaggt |
197 |
Q |
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| T |
12273900 |
gggtggtctttaaacatgtgtctgacacctatataacacttatatg------tggtgtgtcggttgagtaatgttaaagacaaaaaatagaggtgaaggt |
12273993 |
T |
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| Q |
198 |
agttattgttattttgagttacctgtcccagttgatgtctgtatcggacagcgcgaactgtggagtggtggcagcctcggtgtccatggctgtaacaatt |
297 |
Q |
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| T |
12273994 |
agttattgttattttgagttacctgtcccagttgatgtctgtatcggacagcgcgaactgtggagtggtggcagcctcggtgtccatggctataacaatt |
12274093 |
T |
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| Q |
298 |
atttgaacgaacctgtctt |
316 |
Q |
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| T |
12274094 |
atttgaacgaacctgtctt |
12274112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 12274111 - 12274144
Alignment:
| Q |
333 |
ttgttgtgtttcacagagatgaatgacacactct |
366 |
Q |
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| T |
12274111 |
ttgttgtgtttcacagagatgaatgacacactct |
12274144 |
T |
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