View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_9 (Length: 339)
Name: NF2396_high_9
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 9573852 - 9574134
Alignment:
| Q |
20 |
cttatttcccagtgctccctgatccactcaccccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaa |
119 |
Q |
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| T |
9573852 |
cttatttcccagtggtccctgatccactcaccccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaa |
9573951 |
T |
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| Q |
120 |
agcaagaaaatacacgttttagacattgctaatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgca |
219 |
Q |
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| T |
9573952 |
agcaagaagatacacgttttagacattgctaatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgca |
9574051 |
T |
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| Q |
220 |
aactgaagcctccctcttccttataccatgatatacttctataattttatctaagaaatattcaagatacacactactaatca |
302 |
Q |
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| T |
9574052 |
aactgaagcctccctcttccttataccatgatatacttctataattttatctaagaaatattcaagatacacactactaatca |
9574134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 9578458 - 9578699
Alignment:
| Q |
53 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaaaatacacgttttagacattgctaat |
152 |
Q |
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| T |
9578458 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagataaacgttttagacattgctaag |
9578557 |
T |
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| Q |
153 |
cgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttccttataccatgata |
252 |
Q |
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| T |
9578558 |
tgttacttccaagttcc------tattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgtcttccttataccatgata |
9578651 |
T |
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| Q |
253 |
tacttctataattttatctaagaaatattcaagatacacactactaat |
300 |
Q |
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||||||||||||||||||||||| | |||||||| ||| |||||||| |
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| T |
9578652 |
tacttctataattttatctaagagctgttcaagattcaccctactaat |
9578699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 9582960 - 9583142
Alignment:
| Q |
53 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaaaatacacgttttagacattgctaat |
152 |
Q |
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| T |
9582960 |
cattgaaatgctgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaagataaacgttttagacattgctaag |
9583059 |
T |
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| Q |
153 |
cgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttcctt |
241 |
Q |
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| T |
9583060 |
tgttacttccaagttcc------tattttacatcacattaaatttggtcttccttctcatgtttgtaaaatgaagccttcctcttcctt |
9583142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 48878069 - 48878256
Alignment:
| Q |
51 |
cccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaaga--aaatacacgttttagacattgc |
148 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| | | ||| ||||| |
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| T |
48878069 |
cccattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacaagcataagaaattgc |
48878168 |
T |
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| Q |
149 |
taatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttcctta |
242 |
Q |
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| || ||||||| |||| |||| |||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
48878169 |
ttattagtacttcctagtt------cttattttacatcatattaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttcctta |
48878256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 48921620 - 48921568
Alignment:
| Q |
207 |
tctcatgtttgcaaactgaagcctccctcttccttataccatgatatacttct |
259 |
Q |
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| T |
48921620 |
tctcatgtttgcaaaatgaagcttccctcttccttatagcatgatatacttct |
48921568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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