View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2396_low_12 (Length: 332)
Name: NF2396_low_12
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 1796695 - 1796998
Alignment:
| Q |
16 |
gtttactcaattttgtactgtttttaggataaatgaaaacagaaaacataaaagcaaaacatagatgacataaaaggaacatgggagagaatgacatacc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1796695 |
gtttactcaattttgtactgtttttaggataaatgaaaacagaaaacataaaagcaaaacatagatgacataaaaggaacatgggagagaatgacatacc |
1796794 |
T |
|
| Q |
116 |
tcaatgaacgatctactgcaagaaggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1796795 |
tcaatgaacgatctactgcaagaaggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagttt |
1796894 |
T |
|
| Q |
216 |
cattttctggaacatagcgaaggtacaaatgtttgatacttgaaatagcaccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagtt |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1796895 |
cattttctggaacatagcgaaggtacaaatgtttgatacttgaaatagcaccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagtt |
1796994 |
T |
|
| Q |
316 |
atga |
319 |
Q |
| |
|
|||| |
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|
| T |
1796995 |
atga |
1796998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 5194449 - 5194289
Alignment:
| Q |
88 |
aaaggaacatgggagagaatgacatacctcaatgaacgatctactgcaagaaggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaag |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | || | ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5194449 |
aaaggaacatgggagagaatgacatacctcaatgaacgcttta---------gaatgtgggttcaaagatataaatgcagggcagcaacttgaaagtaag |
5194359 |
T |
|
| Q |
188 |
atatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg |
257 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
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| T |
5194358 |
atatttacaatagatgaaaacgtagtttcatttgttggaacatagagaaggtgcaagtgtttgatacttg |
5194289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 6231102 - 6230983
Alignment:
| Q |
138 |
aaggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaag |
237 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||| |
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| T |
6231102 |
aaggatgcgggttcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaatagatgaaaaaaaagtttcattttttggaacagagcgaag |
6231003 |
T |
|
| Q |
238 |
gtacaaatgtttgatacttg |
257 |
Q |
| |
|
|| ||| |||||||| |||| |
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|
| T |
6231002 |
gtgcaagtgtttgatgcttg |
6230983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 5184139 - 5184010
Alignment:
| Q |
100 |
gagagaatgacatacctcaatgaacgatctactgcaagaaggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaata |
199 |
Q |
| |
|
|||||||| ||||||||||||||| | | ||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||| | || |
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|
| T |
5184139 |
gagagaattacatacctcaatgaatgctttactgcacaaagaatgtgagctcaaagatataaatgcagggcagcaaattgaaagtaaggtatttatagta |
5184040 |
T |
|
| Q |
200 |
gataaaaacaaagtttcattttctggaaca |
229 |
Q |
| |
|
||| |||||||||||||||| ||||||||| |
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| T |
5184039 |
gatgaaaacaaagtttcattatctggaaca |
5184010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 5175567 - 5175408
Alignment:
| Q |
101 |
agagaatgacatacctcaatgaacgatctactgcaagaa---ggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaa |
197 |
Q |
| |
|
|||||||||||||||| |||||| | | |||||||| || ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
5175567 |
agagaatgacatacctgaatgaatgctttactgcaaaaataaggatgcgggttcaaagatataaatgcagggcggcaacttgaaagtaagatatttacga |
5175468 |
T |
|
| Q |
198 |
tagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg |
257 |
Q |
| |
|
| ||| |||||||||||||| ||| ||||||| | |||||| ||| || |||||||||| |
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|
| T |
5175467 |
tggatgaaaacaaagtttcagtttttggaacagactgaaggtgcaagtgattgatacttg |
5175408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 5204729 - 5204561
Alignment:
| Q |
92 |
gaacatgggagagaatgacatacctcaatgaacgatctactgcaagaa---ggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaaga |
188 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | | | ||||| || |||| |||||| |||||| ||| |||||||| |||||||||| || |
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| T |
5204729 |
gaacatgggagagaatgacatacctctatgaatgctttggtgcaaaaaaaaggattaaagctcaaggatatagttgcggggcagcagcttgaaagtatga |
5204630 |
T |
|
| Q |
189 |
tatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg |
257 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||| ||||||| ||||||||| ||| |||||||| |||| |
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| T |
5204629 |
tatttacaacagacgaaaacaaaatttcattttttggaacagagcgaaggtgcaagtgtttgatgcttg |
5204561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 5171329 - 5171218
Alignment:
| Q |
108 |
gacatacctcaatgaacgatctactgcaagaa---ggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaatagataa |
204 |
Q |
| |
|
|||||||||||||||| | ||| |||||| || ||||| ||| ||||||||| |||||||||||| ||||| ||||||||||||||| |||| | |
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| T |
5171329 |
gacatacctcaatgaatgctctgctgcaaaaattcggatgcaagctaaaagatatagttgcagggcagcagcttgagagtaagatatttacagcagatga |
5171230 |
T |
|
| Q |
205 |
aaacaaagtttc |
216 |
Q |
| |
|
|||||||||||| |
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|
| T |
5171229 |
aaacaaagtttc |
5171218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 5199569 - 5199600
Alignment:
| Q |
88 |
aaaggaacatgggagagaatgacatacctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5199569 |
aaaggaacatgggagagaatgacatacctcaa |
5199600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 6230968 - 6230902
Alignment:
| Q |
253 |
acttgaaatagcaccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagttatga |
319 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||| ||||||| ||||||||||||| || |||||||| |
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|
| T |
6230968 |
acttgaaataccatcgggtgtagtatatcctacataatccaaacacaaatacaatgagtagttatga |
6230902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 35068705 - 35068786
Alignment:
| Q |
146 |
gggctcaaagatataaatgcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaa |
227 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||| | | ||| || ||||| | |||||||||||||||||| ||||| |
|
|
| T |
35068705 |
gggctcaaagacatagttgcagggcagcagcttgaaaaaaggttatatataatagttgaaaacaaagtttcattttttggaa |
35068786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 5183951 - 5183907
Alignment:
| Q |
275 |
gtacatcctatgtaatccagacacaaatacaataagaagttatga |
319 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
5183951 |
gtacatcctacataatccagacacaaatacaataagtaggtatga |
5183907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 5178062 - 5177902
Alignment:
| Q |
88 |
aaaggaacatgggagagaatgacatacctcaatgaacgatctactgcaagaaggatgtgggctcaaagatataaatgcagggcagcaacttgaaagtaag |
187 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | || | ||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5178062 |
aaaggaaaatgggagagaatgacatacctcaatgaacgcttta---------gaatgtgggttcaaagatataaatgcagggcagcaacttgaaagtaag |
5177972 |
T |
|
| Q |
188 |
atatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg |
257 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||| ||||||| || |||| ||| ||||||||||||| |
|
|
| T |
5177971 |
atatttacgatagatgaaaacaaagtttcactttgtggaacacagatgaggtgcaagtgtttgatacttg |
5177902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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