View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_13 (Length: 305)
Name: NF2396_low_13
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 9596701 - 9596488
Alignment:
| Q |
11 |
atgaatatttcatagatctgaaggttgtttatatgtatgttgtaggaactatccaaaatttcaacaagtggaggcataattatttataaatatttgtaca |
110 |
Q |
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| T |
9596701 |
atgaatatttcatagatctgaaggttgtttatatgtatgttgtaggaactatccaaaatttcaacaagtggaggcataattatttataaatatttgtaca |
9596602 |
T |
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| Q |
111 |
gaaatatataagttcataagccaaaaaatgatggaaattaattagaaattagaaattataccattttatatcgaattttctaatttctttccatgagagt |
210 |
Q |
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| T |
9596601 |
gaaatatataagttcgtaagcgaaaaaatgatggaaattaattagaa-------attataccattatatatcgaattttctaatttcattccatgagagt |
9596509 |
T |
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| Q |
211 |
tttgttatatcccaaggtgat |
231 |
Q |
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| T |
9596508 |
tttgttatatcccaaggtgat |
9596488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 9596463 - 9596419
Alignment:
| Q |
247 |
cgactaattcttattcaaattttcaatcagtacccatattataat |
291 |
Q |
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| T |
9596463 |
cgactaattcttattcaaattttcaatcagtacccatatcataat |
9596419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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