View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_25 (Length: 250)
Name: NF2396_low_25
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 26732900 - 26733138
Alignment:
| Q |
12 |
atgaatgctctagctataatccattgtcacaaagttgatttacatctaatcactctagtataatccaaaaagattatttatatttaaacttgaaaatgtt |
111 |
Q |
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| T |
26732900 |
atgaatgctctagctataatccattgtcacaaagttgatttacatctaatcactctagtataagccaaaaagattatttatatttaaacttgaaaatgtt |
26732999 |
T |
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| Q |
112 |
tgggacagaaccatatacgcataaaaacaattaaaaatttaactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggat |
211 |
Q |
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| T |
26733000 |
tgggacagaaccatatacgcataaaaacaattaaaaatttaactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggat |
26733099 |
T |
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| Q |
212 |
gatggtggaaataacttgaaacatagaatcaatgccttc |
250 |
Q |
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| T |
26733100 |
gatggtggaaataacttgaaacatagaatcaatgccttc |
26733138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 26724460 - 26724658
Alignment:
| Q |
51 |
ttacatctaatcactctagtataatccaaaaagattatttatatttaaacttgaaaatgtttgggacagaaccatatacgcataaaaacaattaaaaatt |
150 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26724460 |
ttacatctaatcactctagtataagccaaaaagattatttatatt-aaacttggaaatgttagggacagaaccatatacgcataaaaacaattaaaaatt |
26724558 |
T |
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| Q |
151 |
taactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggatgatggtggaaataacttgaaacatagaatcaatgccttc |
250 |
Q |
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| T |
26724559 |
taactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggatgatggtggaaataacttgaaacatagaatcaatgccttc |
26724658 |
T |
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