View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_27 (Length: 244)
Name: NF2396_low_27
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_27 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 43465150 - 43464917
Alignment:
| Q |
11 |
atcatcatcaagagagtgggatgatctgaactctgaaagtatcaatgaaaaactattagacaaataagtgtctagcaggttattgtttcctttgaatttg |
110 |
Q |
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| T |
43465150 |
atcatcatcaagagagtgggatgatctgaactctgaaagtatcaatgaaaaactattagacaaataagtgtctagcagattattgtttcctttgaatttg |
43465051 |
T |
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| Q |
111 |
tcttagtttttatgtttggatggttaattggatgtttttgtgcattgacacatcaacatattttattttatgctttatgagatacatggtgttaatttga |
210 |
Q |
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| T |
43465050 |
tcttagtttttatgtttggatggttaattggatgtttttgtgcattgacacatcaacatattttattttatgctttatgagatacatggtgttaatttga |
43464951 |
T |
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| Q |
211 |
tcaatgttgattgaacctgtttgaagctttttat |
244 |
Q |
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| T |
43464950 |
tcaatgttgattgagcctgtttgaagctttttat |
43464917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 43459436 - 43459316
Alignment:
| Q |
16 |
catcaagagagtgggatgatctgaactctgaaagtatcaatgaaaaactattagacaaataagtgtctagcaggttattgtttcctttgaatttgtctta |
115 |
Q |
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| T |
43459436 |
catcaagagagtgggatggtctgaactctgaaagtatcaatgaaaaactactaggcaaataaatgtttagcgggttaatggttcctttgaatttgtctta |
43459337 |
T |
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| Q |
116 |
gtttttatgtttggatggtta |
136 |
Q |
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| T |
43459336 |
gtttttatgtttggatagtta |
43459316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 43482237 - 43482163
Alignment:
| Q |
97 |
ttcctttgaatttgtcttagtttttatgtttggatggttaattggatgtttttgtgcattgacacatcaacatat |
171 |
Q |
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| T |
43482237 |
ttcctttgaatttgtcttggtttttaggtttggatagtttatttgatgtttttgtgctttgacacttcaacatat |
43482163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 43475095 - 43475022
Alignment:
| Q |
97 |
ttcctttgaatttgtcttagtttttatgtttggatggttaattggatgtttttgtgcattgacacatcaacatat |
171 |
Q |
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| T |
43475095 |
ttcctttgaatttgtcttggtttttaggtttggatagtctattggttg-ttttgtgctttgacacatcaacatat |
43475022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 43478489 - 43478436
Alignment:
| Q |
169 |
tattttattttatgctttatgagatacatggtgttaatttgatcaatgttgatt |
222 |
Q |
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| T |
43478489 |
tattttattttatgctttatgagatgcatggtgttgatttcattaatgttgatt |
43478436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 43478606 - 43478508
Alignment:
| Q |
61 |
aactattagacaaataagtgtctagcaggttattgtttcctttgaatttgtcttagtttttatgtttggatggt---taattggatgtttttgtgcattg |
157 |
Q |
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| T |
43478606 |
aactattagacaaataagtgtttagcagcttattggttcctttg----------agtttttatgtttggatagttagtaattggatgtttttgtgctttg |
43478517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 43467329 - 43467281
Alignment:
| Q |
170 |
attttattttatgctttatgagatacatggtgttaatttgatcaatgtt |
218 |
Q |
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| T |
43467329 |
attttattttatgctttatgagatacatagtattgatttgattaatgtt |
43467281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 43486873 - 43486825
Alignment:
| Q |
46 |
aaagtatcaatgaaaaactattagacaaataagtgtctagcaggttatt |
94 |
Q |
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| T |
43486873 |
aaagtatcaataataaactattagaaaaataagtatttagcaggttatt |
43486825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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