View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_28 (Length: 241)
Name: NF2396_low_28
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 44605275 - 44605044
Alignment:
| Q |
21 |
gctgcttcattgctttgcgaattggagcattgcggcatgttttccagccataaagcctgtcaacctacaa-----------cagtgtgacaaaattgagc |
109 |
Q |
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| T |
44605275 |
gctgcttcattgctttacgaattggagcattgcgacatgttttccagccataaagcctgtcaacctacaatgttgcaagaacagtgtgacaaaattgagg |
44605176 |
T |
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| Q |
110 |
aacctataaagaacgtatactggaagcagcatctcatactcaccttatttaatgcaacaatgaactctgcgttcctcatttttaatagattgagtgactc |
209 |
Q |
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| T |
44605175 |
aacctataaagaacgtatactggaagcagcatctcatactcaccttatttaatgcaacaatgaactctgtgttcctcatttttaatagattgagtgactc |
44605076 |
T |
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| Q |
210 |
tatagtttgtggctctaagccatgcataatgt |
241 |
Q |
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| T |
44605075 |
tatagtttgtggctctaagccatgcataatgt |
44605044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 44627046 - 44626809
Alignment:
| Q |
21 |
gctgcttcattgctttgcgaattggagcattgcggcatgttttccagccataaagcctgtcaacctacaacagtg---------tgacaaaattgagcaa |
111 |
Q |
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| T |
44627046 |
gctgcgtcattgctttacgaattggagcattgcgacatgttttccagccataaagcctgtcaacctgcaatgttgcaagaacagtgacagagttgaacaa |
44626947 |
T |
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| Q |
112 |
cctataaagaacgtatactggaagcagcatctcata--------ctcaccttatttaatgcaacaatgaactctgcgttcctcatttttaatagattgag |
203 |
Q |
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| T |
44626946 |
cctgtaaaaaacatatattggaagtagtagctcatgagagtatgctcaccttattcaatgcaacgatgaattcagtgttcctcatttttaatagattgag |
44626847 |
T |
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| Q |
204 |
tgactctatagtttgtggctctaagccatgcataatgt |
241 |
Q |
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| T |
44626846 |
tgactctatagtttgtggctctaagccatgcataatgt |
44626809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 182590 - 182498
Alignment:
| Q |
147 |
actcaccttatttaatgcaacaatgaactctgcgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccatgcataat |
239 |
Q |
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| T |
182590 |
actcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataat |
182498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 593528 - 593621
Alignment:
| Q |
148 |
ctcaccttatttaatgcaacaatgaactctgcgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccatgcataatgt |
241 |
Q |
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| T |
593528 |
ctcaccttattcaagacaatgatgaagtctgtgttggtcctttttaatagatcgagtgaatctatagtttgttgctgtatgccatgcataatgt |
593621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 29220191 - 29220244
Alignment:
| Q |
188 |
tttttaatagattgagtgactctatagtttgtggctctaagccatgcataatgt |
241 |
Q |
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| T |
29220191 |
tttttaatagattgagcaactttatagtttgtggctcgcagccacgcataatgt |
29220244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 41371471 - 41371427
Alignment:
| Q |
46 |
agcattgcggcatgttttccagccataaagcctgtcaacctacaa |
90 |
Q |
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| T |
41371471 |
agcattgcgacatgttttccatccataaatcctgtcaacctacaa |
41371427 |
T |
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