View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_30 (Length: 236)
Name: NF2396_low_30
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 5568040 - 5567908
Alignment:
| Q |
90 |
agaaactggcttagatgttgtttccagattttgtagaaatgaagattgatttcaattatttatatt-caagtgactgaaattacaacattgtaatgtaaa |
188 |
Q |
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| T |
5568040 |
agaaaatggcttagatgttgtttccagattttgtaggaatgaagattgattccaattatttatatttcaagtgactgaaattacaacattgtattgtaaa |
5567941 |
T |
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| Q |
189 |
attgctattcttgttgacattggtaaagacatt |
221 |
Q |
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| T |
5567940 |
attgctattcttgttgacattggtgaagacatt |
5567908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5568091 - 5568026
Alignment:
| Q |
1 |
tctttacatctttgtttctcttctctcttccttttctgtttttgttgagatagaaaatggcttaga |
66 |
Q |
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| T |
5568091 |
tctttacatctttgtttctcttctctcttccttttctatttttgatgagatagaaaatggcttaga |
5568026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 36118932 - 36118997
Alignment:
| Q |
154 |
ttcaagtgactgaaattacaacattgtaatgtaaaattgctattcttgttgacattggtaaagaca |
219 |
Q |
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| T |
36118932 |
ttcaagtgactggaattacaacattgtattgtaaaattacaattcttgttgacaatggtgaagaca |
36118997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 36118824 - 36118885
Alignment:
| Q |
7 |
catctttgtttctcttctctctt-ccttttctgtttttgttgagat-agaaaatggcttaga |
66 |
Q |
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| T |
36118824 |
catctttgtttctcttctttttttccttttctgtttttgttaagataaaaaaatggcttaga |
36118885 |
T |
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