View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_32 (Length: 233)
Name: NF2396_low_32
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 30078438 - 30078658
Alignment:
| Q |
13 |
atactactactacaaataccactcaatttgttgatgatcacattaccaaatcaacacctgtttctgttaattttgatgaatctacatcaaaccatgatgt |
112 |
Q |
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| T |
30078438 |
atactactactacaaataccactcaatttgttgatgatcacattaccaaatcaacacctgtttctgttaattttgatgaatctacatcaaaccatgatgt |
30078537 |
T |
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| Q |
113 |
tattgataaacctcgagtgaaatcatcgcaaccacctcccagaaaaattgggtttccggagccggttgcaataaagagtgacacccctgaccctgtgaag |
212 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30078538 |
tattgataaacctcgagtgaaatcatcgcaaccgcctcccagaaaaattgggtttccggagccggttgcaataaagagtgacacccctgaccctgagaag |
30078637 |
T |
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| Q |
213 |
gaggagaagaaggaggagaag |
233 |
Q |
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||||||||||||||||||||| |
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| T |
30078638 |
gaggagaagaaggaggagaag |
30078658 |
T |
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