View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_35 (Length: 212)
Name: NF2396_low_35
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 39803168 - 39803348
Alignment:
| Q |
17 |
agttttaaattggtttagtatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacat |
116 |
Q |
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| T |
39803168 |
agttttaaattggtttagtatttatagcattctctctaattatgtttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacat |
39803267 |
T |
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| Q |
117 |
gcaagtcttaattgacttgctagtgtttgaaatatttggatggagaaaaatgcttgtgtttttcgtgataaagggcctttg |
197 |
Q |
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| T |
39803268 |
gcaagtcttaattgacttgctagtgtttgaaatatttggatggagaaaaatgcttgtttttttcgtgataaagggcttttg |
39803348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 39811105 - 39811290
Alignment:
| Q |
18 |
gttttaaattggtttagtatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatg |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
39811105 |
gttttaaattggtttagcatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcagtgttgtgctctaaagagatacatg |
39811204 |
T |
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| Q |
118 |
caag------tcttaattgacttgctagtgtttgaaatatttggatggagaaaaatgcttgtgtttttcgtgataaagggcctttg |
197 |
Q |
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|||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39811205 |
caagtcttcatcttaattgacttgctcatgtttgaagtatttggacggagaaaaatgcttgtgtttttcgtgataaagggcttttg |
39811290 |
T |
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