View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2396_low_36 (Length: 208)
Name: NF2396_low_36
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 44604647 - 44604448
Alignment:
| Q |
1 |
cagccacaggcttcgaaacagtttgatttttagcagcttctatggagacatacagagtgttagcaacnnnnnnntggtatcaagtaattacacaaattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
44604647 |
cagccacaggcttcgaaacagtttgatttttagcagcttctatggagacatacagagtgttaacaacaaaaaaatggtatcaagtaattacacaaattcc |
44604548 |
T |
|
| Q |
101 |
aagcatatagaagtacaaactagcaataaaatgcaaatctcaccaggattacaaagctgcctcctgattgcatcaaaacgctctgcttgttctctctgct |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44604547 |
aagtatatagaagtacaaactagcaataaaatgcaaatctcaccaggattacaaagctgcctcctgattgcatcaaaacgctctgcttgttctctctgct |
44604448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University