View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_5 (Length: 433)
Name: NF2396_low_5
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 41484654 - 41484249
Alignment:
| Q |
15 |
acatatttagaattacagtaagtttgtcttaactatagtggatgagtactgtatttttgtgaagctatactttgtagattttgcaaggatgtgtctcttt |
114 |
Q |
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| T |
41484654 |
acatatttagaattacagtaagtttgtcttaactatagtggatgagtactgtatttttgtgaagctatactttgtagattttgcaaggatgtgtctcttt |
41484555 |
T |
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| Q |
115 |
cgtttgtaaaattgtgttgtttagtacatgtttggtaccatattgaatttgttgaaattaccgtgagccatcatgattttgtaaaaacaacactctgtaa |
214 |
Q |
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| T |
41484554 |
cgtttgtaaacttgtgttgtttagtacatgtttggtaccatattgaatttgttgaaattaccgtgagccatcatgattttgtaaaaacaacactctgtaa |
41484455 |
T |
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| Q |
215 |
cttttacaaaattactgtgcctcacactgatttctgaaaattcactgtaatacaaagtatgcacatagaagtctatgtaaagaaaaacttttggaataga |
314 |
Q |
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| T |
41484454 |
cttttacaaaattactgtgcctcacactgatttctgaaaattcactgtaatacaaagtatgcacatagaagtctatgtaaagaaaaacttttggaataga |
41484355 |
T |
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| Q |
315 |
tagaattcaataatttatagtgaggggacttgatacccaatgttggtcactcctagctaactaaattctccaacattgttaataattgtttttgccttag |
414 |
Q |
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| T |
41484354 |
tagaattcaataatttatagtgaggggacttgatacccaatgttggtcactcctagctaactaaattctccaacattgttaataattgtttttgccttag |
41484255 |
T |
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| Q |
415 |
cttttc |
420 |
Q |
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| T |
41484254 |
cttttc |
41484249 |
T |
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