View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_low_6 (Length: 400)
Name: NF2396_low_6
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 43464855 - 43464601
Alignment:
| Q |
21 |
ggaaatttaagttggctgttatgattacgaaaagtccctccttttaccgttttctttaaacttgatgcttctaatgtgatgaaattgtacgttaatgtga |
120 |
Q |
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| T |
43464855 |
ggaaatttaagttggctgttatgattacgaaaagtccctccttttaccgttttctttaaacttgatgcttctaatgtgatgaaattgtacgttaatgtga |
43464756 |
T |
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| Q |
121 |
tgaaattgtaccgttttcttttgttgctgtcaccgaaaatgacattttttgctatggatcagatgatgcaagcttttcacattgatctgaactcagaaac |
220 |
Q |
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| T |
43464755 |
tgaaattgtaccgttttcttttgttgctgtcaccgaaaatgacattttttgctatggatcagatgatgcaagcttttcacattgatctgaactcagaaac |
43464656 |
T |
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| Q |
221 |
cattcttctagtaacttatctacattctgctttgattatatagaaaatttagaag |
275 |
Q |
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| T |
43464655 |
cattcttctagtaacttatctacattctgctttgattatatagaaaatttagaag |
43464601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 43464569 - 43464486
Alignment:
| Q |
301 |
aaaccaaccggaatgtaactggaaaatagcaacaacagagcaagaagagctatccatgatgatgagggtgtgatcttaaataag |
384 |
Q |
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| T |
43464569 |
aaaccaaccggaatgtaactggaaaatagcaacaagagagcaagaagagctatccatgatgatgagggtgtgatcttaaataag |
43464486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 43474744 - 43474684
Alignment:
| Q |
155 |
gaaaatgacattttttgctatggatcagatgatgcaagcttttcacattgatctgaactca |
215 |
Q |
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| T |
43474744 |
gaaaatgacattttttgcaatggatcagatgaagcaacattttcacattgatctgaactca |
43474684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 43478300 - 43478250
Alignment:
| Q |
180 |
cagatgatgcaagcttttcacattgatctgaactcagaaaccattcttcta |
230 |
Q |
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| T |
43478300 |
cagatgatgcaaccttttcacattgatctgaactcataaatcattcttcta |
43478250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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