View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2398_high_2 (Length: 520)
Name: NF2398_high_2
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2398_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 28586780 - 28586299
Alignment:
| Q |
19 |
aaaagttggcagccctagacttagtcacaccaaattcatttgacaacaactacttt-aaaaatttaattcagaagaagggtcttcttcaatcagatcaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28586780 |
aaaagttggcagccctagacttagtcacaccaaattcatttgacaacaattacttttaaaaatttaattcaaaagaagggtcttcttcaatcagatcaag |
28586681 |
T |
|
| Q |
118 |
ttttattcagtggaggatctacagattctatc-gtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatgg |
216 |
Q |
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|||||||||||||||| |||||| ||||| | ||||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||| |
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| T |
28586680 |
ttttattcagtggagggtctacaaattctttttgtttcagaatacagcaacaatcctacaactttcaaatccgactttgcaactgctatgataaagatgg |
28586581 |
T |
|
| Q |
217 |
gagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgcagtcaactaattatacaatttcattcttgattaacaagaaatcaa |
316 |
Q |
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|||||||||||||||| || || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586580 |
gagatattgaacccttaaccggatcggctggagtcataagaagcatatgcagtgcagtcaactaattatacaatttcattcttgattaacaagaaatcaa |
28586481 |
T |
|
| Q |
317 |
ttgccaattgttttgtatatagaattttatagctatgagaacattgcttgaaacttctgttatcgaaaaagatgattgtattatataactcataaaaaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
28586480 |
ttgccaattgttttgtatatagaattttatagctatgagaacattgcttgaaacttctgttatcgaaaaagatgagtgtatt---taactcataaaaaat |
28586384 |
T |
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| Q |
417 |
acattttggtatgttcattagtgtcaaataaaatcaattgagaatttgagattgccttttataattcccttttttatattagctct |
502 |
Q |
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| T |
28586383 |
acattttggtatgttca-tagtgtcaaataaaatcaattgagaatttgagattgccttttataattcccttttttatattagctct |
28586299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 28591867 - 28591583
Alignment:
| Q |
19 |
aaaagttggcagccctagacttagtcacaccaaattcatttgacaacaactactttaaaaatttaattcagaagaagggtcttcttcaatcagatcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591867 |
aaaagttggcagccctagacttggtcacaccaaattcatttgacaacaactactttaaaaatttaattcagaagaagggtcttcttcaatcagatcaagt |
28591768 |
T |
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| Q |
119 |
ttt-attcagtggaggatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatggg |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591767 |
ttttattcagtggaggatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatggg |
28591668 |
T |
|
| Q |
218 |
agatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgcagtcaactaattatacaatttcattcttgat |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| | |||||| |
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| T |
28591667 |
agatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgctgtcaactaatcatacaaattcttccttgat |
28591583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 28596107 - 28596380
Alignment:
| Q |
19 |
aaaagttggcagccctagacttagtcacaccaaattcatttgacaacaactactttaaaaatttaattcagaagaagggtcttcttcaatcagatcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596107 |
aaaagttggcagccctagacttggttacaccaaattcttttgacaacaactactttaaaaatttaattcagaagaagggtcttcttcaatcagatcaagt |
28596206 |
T |
|
| Q |
119 |
tttattcagtggag---gatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatg |
215 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28596207 |
tttattcggtggaggaggatctacagattctatcgtttctgaatacagcaaaaatcctacaacttttaagtctgactttgccgctgctatgataaagatg |
28596306 |
T |
|
| Q |
216 |
ggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgcagtcaactaattatacaa |
289 |
Q |
| |
|
|||||||| ||||||| || || || ||||| ||||||||||| || |||||||| |||| ||||| ||||| |
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| T |
28596307 |
ggagatatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgctatcaattaattttacaa |
28596380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 32494327 - 32494582
Alignment:
| Q |
19 |
aaaagttggcagccctagacttagtcacaccaaattcatttgacaacaactactttaaaaatttaattcagaagaagggtcttcttcaatcagatcaagt |
118 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32494327 |
aaaagttggcagccctggacttggttacaccaaattcttttgataacaactactttaaaaatttaattcagaagaagggtcttcttcaatcagatcaagt |
32494426 |
T |
|
| Q |
119 |
tttattcagtggag---gatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatg |
215 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
32494427 |
tttatttggtggaggaggatctacagattctatcgtttctgaatacagcaaaaatcctactacttttaagtcagactttgctgctgctatgataaagatg |
32494526 |
T |
|
| Q |
216 |
ggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgc |
271 |
Q |
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|||||||| ||||||| || || || ||||| ||||||||||| || |||||||| |
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| T |
32494527 |
ggagatatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgc |
32494582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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