View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2398_high_5 (Length: 238)

Name: NF2398_high_5
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2398_high_5
NF2398_high_5
[»] chr7 (6 HSPs)
chr7 (18-238)||(4660117-4660340)
chr7 (37-238)||(4665275-4665474)
chr7 (37-238)||(4629249-4629448)
chr7 (158-238)||(4671081-4671161)
chr7 (114-222)||(4642092-4642200)
chr7 (158-222)||(4635289-4635353)
[»] chr4 (1 HSPs)
chr4 (164-238)||(18927343-18927417)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4660117 - 4660340
Alignment:
Q  18 aggtttaccttgaaata---ttaagatatgatcaaacgatatcttttatgaagagctacaataatttagtttttgctttatatatgtttacactatactt 114  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4660117 aggtttaccttgaaatagtattaagatatgatcaaacgatatcttttatgtagagctaaaataatttagtttttgctttatatatgtttacactgtactt 4660216  T
Q  115 acatatatagagggggtgttccatgtaactactacatataagttttgaagttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaagg 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4660217 acatatatagagggggtgttccatgtaactgctacatataagttttgaagttttggcatgaatacaaccgtgttctttgattcccaatctcaaagaaagg 4660316  T
Q  215 ttgttcttgagtacttggcctcgc 238  Q
    ||||||||||||||||||||||||    
T  4660317 ttgttcttgagtacttggcctcgc 4660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 4665275 - 4665474
Alignment:
Q  37 aagatatgatcaaacgatatcttttatgaagagctacaataatttagtttttgctttatatatgtttacactatacttacatatatagagggggtgttcc 136  Q
    ||||||||||||||| | ||||||||||  | || | ||| ||||||||||  |  ||||||||||||||||| |||||||| |||| | ||| ||||||    
T  4665275 aagatatgatcaaacaacatcttttatgctgtgcaaaaattatttagtttta-cactatatatgtttacactacacttacatgtataaaaggg-tgttcc 4665372  T
Q  137 atgtaactactacatataagttttgaagttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaaggttgttcttgagtacttggcctc 236  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||| | |||||    
T  4665373 atgtaactgctaaatataaattttgaagttttggcatgaatacgaccgtgttctttgattcccaatcccagagaaaggctgttctcgagtacctagcctc 4665472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 4629249 - 4629448
Alignment:
Q  37 aagatatgatcaaacgatatcttttatgaagagctacaataatttagtttttgctttatatatgtttacactatacttacatatatagagggggtgttcc 136  Q
    ||||||||||||||| | ||||||||||  | || | ||| |||| |||||  | ||||| ||||||||||||||||| ||| |||| | | | ||||||    
T  4629249 aagatatgatcaaacaacatcttttatgctgtgcaaaaattatttcgtttta-cattatacatgtttacactatacttgcatgtataaaagag-tgttcc 4629346  T
Q  137 atgtaactactacatataagttttgaagttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaaggttgttcttgagtacttggcctc 236  Q
    |||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||| | |||||    
T  4629347 atgtaaccgctaaatataaattttgaagttttggcatgaatacgaccgtgttctttgattcccaatcccagagaaaggctgttctcgagtacctagcctc 4629446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 4671081 - 4671161
Alignment:
Q  158 tttgaagttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaaggttgttcttgagtacttggcctcgc 238  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||| | ||||  |||||||||||||||||||||||    
T  4671081 tttgaaattttgacatgaatacgatcgtgttctttgattcccaatctcagaaaaagaatgttcttgagtacttggcctcgc 4671161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 4642092 - 4642200
Alignment:
Q  114 tacatatatagagggggtgttccatgt-aactactacatataagttttgaagttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaa 212  Q
    |||||||||| ||| |||||||||| | |||| ||| ||||||  |||||||||||| ||||||||||| ||| || ||||||||| ||||||| |||||    
T  4642092 tacatatata-aggtggtgttccatattaactgctaaatataaactttgaagttttgacatgaatacgatcgtcttttttgattcctaatctcagagaaa 4642190  T
Q  213 ggttgttctt 222  Q
     | |||||||    
T  4642191 agatgttctt 4642200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 4635289 - 4635353
Alignment:
Q  158 tttgaagttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaaggttgttctt 222  Q
    |||||||||||| ||||||||||| |||||| ||| ||||||||||||| ||||| | |||||||    
T  4635289 tttgaagttttgacatgaatacgatcgtgtttttttattcccaatctcagagaaaagatgttctt 4635353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 18927417 - 18927343
Alignment:
Q  164 gttttggcatgaatacgaccgtgttctttgattcccaatctcaaagaaaggttgttcttgagtacttggcctcgc 238  Q
    |||||| ||||||||||| |||| ||||||||| ||||| ||| ||||||| ||||| |||||||||| ||||||    
T  18927417 gttttgacatgaatacgatcgtggtctttgattaccaatttcagagaaagggtgttcatgagtacttgccctcgc 18927343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University