View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2398_low_1 (Length: 552)
Name: NF2398_low_1
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2398_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 35 - 462
Target Start/End: Complemental strand, 20617223 - 20616781
Alignment:
| Q |
35 |
ttagattttactaatcaaacaattgaattaaaagttattaatcaataaaacgactttgacacaatgataataagttgtattcttttcagtaacaattagt |
134 |
Q |
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| T |
20617223 |
ttagattttactaatcaaacaattgaattaaaagttcttaatcaataaaacgattttgacacagtgataataagttgtattcttttcactaacaattatt |
20617124 |
T |
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| Q |
135 |
gaatcaatgaaattacatataaaaatataaattcaaaaatatttttgtaatttcgatgaatacaccataatataaactactatggtgacatgagattttt |
234 |
Q |
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| T |
20617123 |
aaatcaatgaaattacatataaaaaaataaattcaaaaatatttttgtaatttcgatgaatacaccataatataaactactatggtgacatgagattttt |
20617024 |
T |
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| Q |
235 |
ctagaacaagcaagtgtaaatactcaaaaagcatg---------------ggtaactgatgaacacaacaacagttggcaacaaaaagaacacaatggtg |
319 |
Q |
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| T |
20617023 |
ctagaacaagcaagtgcaaatactcaaaaagcatgggtcatcatcatcatggtaactgatgaacacaacaacagttggcaacaaaaagaacacaatggtg |
20616924 |
T |
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| Q |
320 |
gtgcaagtgctgatgacactgcttcttttaccttttccttactctcctaaactaaagtgttacaacaaaaacctcctaaatttacattgtgtgttatttt |
419 |
Q |
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| T |
20616923 |
gtgcaagtgttgatgacattgcttcttttaccttttccttactctgctaaactaaagtgttacaacaaaaacctcctaaatttacattgtgtgttatttt |
20616824 |
T |
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| Q |
420 |
gggttatcaattttcttcaatctcaatccactcaactttcacg |
462 |
Q |
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| T |
20616823 |
gggttatcaattttcttcaatctcaatccactcaactttcacg |
20616781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 544
Target Start/End: Complemental strand, 20616728 - 20616699
Alignment:
| Q |
515 |
cgaatattctgcatactttttgttcatctc |
544 |
Q |
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| T |
20616728 |
cgaatattctgcatactttttgttcatctc |
20616699 |
T |
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