View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2398_low_12 (Length: 220)
Name: NF2398_low_12
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2398_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5399927 - 5400115
Alignment:
| Q |
18 |
gttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttactcacctgaataaaatagttgaac |
117 |
Q |
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| T |
5399927 |
gttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaataaaatagttgaac |
5400026 |
T |
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| Q |
118 |
aaatagctgatttaattatataacaaaataattaatgccagttatattaattgttgtctaggtgactaaatataagttccaagaataat |
206 |
Q |
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| T |
5400027 |
aaatagctgatttaattatataacaaaataattaatgccagttatattaattgttgtctaggtgactaaatataagttccaagattaat |
5400115 |
T |
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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 5391208 - 5391298
Alignment:
| Q |
18 |
gttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttactcacctgaataaaa |
108 |
Q |
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| T |
5391208 |
gttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaa |
5391298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 5394746 - 5394831
Alignment:
| Q |
18 |
gttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttactcacctgaa |
103 |
Q |
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| T |
5394746 |
gttcatcatgctataaggtgaaaatccaaagatggggtgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaa |
5394831 |
T |
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