View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2398_low_3 (Length: 453)
Name: NF2398_low_3
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2398_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 14721978 - 14722402
Alignment:
| Q |
18 |
aatttcatacatcaagtcatgaaactcggcttcaaaggaggtggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatccca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14721978 |
aatttcatacatcaagtcatgaaactcggcttcaaaggaggtggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatccca |
14722077 |
T |
|
| Q |
118 |
ctacaagttgcaggtcggaaacaacccttaatagaaccatcaatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14722078 |
ctacaagttgcaggtcggaaacaacccttaatagaaccatcaatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgaga |
14722177 |
T |
|
| Q |
218 |
agcattaggcgcatgatcctagacaaagaaaactcttaaaatctcaaattcctacatgttagaataagaatgcgcattggtatgattcccagacaataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14722178 |
agcattaggcgcatgatcctagacaaagaaaactcttaaaatctcaaattcctacatgttagaataagaatgcgcattggtatgattcccagacaataaa |
14722277 |
T |
|
| Q |
318 |
gtgttagaacaccctaagttagcagtggtcttcgaattaactttgacaccattaaataattgcttgtttctacattaccatatgatatttatcacattga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14722278 |
gtgttagaacaccctaagttagcagtggtcttcgaattaactttgacaccattaaataattgcttgtttctacattaccatatgatatttatcacattga |
14722377 |
T |
|
| Q |
418 |
taatggctgaatgaccaccacttca |
442 |
Q |
| |
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| T |
14722378 |
taatggctgaatgaccaccacttca |
14722402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 36935876 - 36935823
Alignment:
| Q |
137 |
aacaacccttaatagaaccatcaatattacacttgacccaactaaggatggggg |
190 |
Q |
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||||||||||| || ||||||||||||||||| ||||||| |||||||||||| |
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| T |
36935876 |
aacaacccttattaataccatcaatattacactagacccaattaaggatggggg |
36935823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 17602213 - 17601790
Alignment:
| Q |
18 |
aatttcatacatcaagtcatgaaactcggcttcaaaggaggtggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatccca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17602213 |
aatttcatacatcaagtcatgaaactcggcttcaaaggaggtggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatccca |
17602114 |
T |
|
| Q |
118 |
ctacaagttgcaggtcggaaacaacccttaatagaaccatcaatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgaga |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17602113 |
ctacaagttgcaggtcggaaacaacccttaatagaaccatcaatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgaga |
17602014 |
T |
|
| Q |
218 |
agcattaggcgcatgatcctagacaaagaaaactcttaaaatctcaaattcctacatgttagaataagaatgcgcattggtatgattcccagacaataaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
17602013 |
agcattaggcgcatgatcctagacaaagaaaactcttaaaatctcaaattcctacatgttagaataagaatgtgcattggtatga-tcccagacaataaa |
17601915 |
T |
|
| Q |
318 |
gtgttagaacaccctaagttagcagtggtcttcgaattaactttgacaccattaaataattgcttgtttctacattaccatatgatatttatcacattga |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17601914 |
gtgttagaacaccctaagttagcagtggtcttcgaattaactttgaaaccattaaataattgcttgtttctacattaccatatgatatttatcacattga |
17601815 |
T |
|
| Q |
418 |
taatggctgaatgaccaccacttca |
442 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
17601814 |
taatggctgaatgaccaccacttca |
17601790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 15886967 - 15887087
Alignment:
| Q |
18 |
aatttcatacatcaagtcatgaaactcggcttcaaaggaggtggtgttatgcatattgaccgca-----acctaaat-ttaagcatcctcatccctaaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||| || |||||||| |||||||||| |
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| T |
15886967 |
aatttcatacatcaagtcatgaaactcagcttcaaaggaggtggtgttatgcatattaactgcaaaactacctaaatatttagcatccttatccctaaaa |
15887066 |
T |
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| Q |
112 |
atcccactacaagttgcaggt |
132 |
Q |
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||||||||||||||||||||| |
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| T |
15887067 |
atcccactacaagttgcaggt |
15887087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 12453044 - 12452956
Alignment:
| Q |
102 |
atccctaaaaatcccactacaagttgcaggtcggaaacaacccttaatagaaccatcaatattacacttgacccaactaaggatggggg |
190 |
Q |
| |
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||||||||||||||||| |||| ||||||| | |||||||||| |||||||||| || |||| |||| | | ||||||||||||| |
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| T |
12453044 |
atccctaaaaatcccaccacaaattgcagggcttgcacaacccttaggagaaccatcagtactacatttgatctagctaaggatggggg |
12452956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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