View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2398_low_4 (Length: 366)

Name: NF2398_low_4
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2398_low_4
NF2398_low_4
[»] chr2 (7 HSPs)
chr2 (208-354)||(25557788-25557936)
chr2 (15-118)||(25558449-25558552)
chr2 (121-210)||(25558086-25558173)
chr2 (208-286)||(4865478-4865555)
chr2 (230-307)||(37828446-37828523)
chr2 (251-307)||(4865682-4865739)
chr2 (208-307)||(34887826-34887924)
[»] chr7 (5 HSPs)
chr7 (208-307)||(1505543-1505643)
chr7 (220-307)||(23457411-23457499)
chr7 (220-307)||(23533269-23533357)
chr7 (208-307)||(23474929-23475029)
chr7 (242-307)||(23443335-23443401)
[»] chr5 (3 HSPs)
chr5 (208-307)||(17476169-17476268)
chr5 (230-296)||(7148294-7148360)
chr5 (230-307)||(38299728-38299804)
[»] chr4 (2 HSPs)
chr4 (208-286)||(53801506-53801584)
chr4 (208-286)||(12828554-12828632)
[»] chr1 (2 HSPs)
chr1 (220-309)||(27630998-27631088)
chr1 (252-309)||(51249165-51249223)
[»] chr3 (2 HSPs)
chr3 (208-286)||(30259628-30259706)
chr3 (222-278)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (208-307)||(1706803-1706903)
chr6 (211-306)||(34448430-34448526)
chr6 (251-307)||(1706590-1706646)
chr6 (253-309)||(5449483-5449541)
[»] chr8 (2 HSPs)
chr8 (221-307)||(1410698-1410783)
chr8 (251-307)||(13706217-13706274)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 25557936 - 25557788
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg--tttttattgggagaagaacaattt 305  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  306 tcaatatgagtatatactactcgcattgccatatttgggtcacaggttc 354  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  25557836 ttaatatgagtatatactactcgcattgccatatttgggtcacaggttc 25557788  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 25558552 - 25558449
Alignment:
Q  15 acctgtgttgtgaaatagggatttaagagttgtgttttgtttttaacaggttgtgtaatgggcttattgggcttagtttaaaacttttactatcagcctt 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  25558552 acctgtgttgtgaaatagggatttaggagttgtgttttgtttttaacaggttgtgtaatgggcttattaggcttagtttaaaacttttactaccagcctt 25558453  T
Q  115 acat 118  Q
    ||||    
T  25558452 acat 25558449  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 25558173 - 25558086
Alignment:
Q  121 taattgctaaaatggatataattttgctcttttttcttaattaaaattacctatttgtgttttaggggatttaattacctatttgttgtt 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25558173 taattgctaaaatggatctaattttgctcttttttcttaattaa--ttacctatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 4865555 - 4865478
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttt 286  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgttttt 4865478  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  230 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaattttc 307  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| || ||||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaac-gtttttattgggagaagaacaattttc 307  Q
    |||||||||||||||| |||||||||||||  ||||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 34887924 - 34887826
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttat-tgggagaagaacaatttt 306  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||   |||||| | | ||||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaaaaattttatatagaagaagaacaatttt 34887827  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaatttt 306  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||| ||||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  307 c 307  Q
    |    
T  1505543 c 1505543  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaattttc 307  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| || ||||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaac-gtttttattgggagaagaacaattttc 307  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| |  ||||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttta-ttgggagaagaacaatttt 306  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||||||  |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  307 c 307  Q
    |    
T  23474929 c 23474929  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  242 acgtggggagtattttggtcagtttatatgggagtgaacgttttta-ttgggagaagaacaattttc 307  Q
    |||||| | |||||||| | ||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaatttt 306  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||| ||||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 7148360 - 7148294
Alignment:
Q  230 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttattgggagaa 296  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| | ||||| |||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagcttttttgttgggagaa 7148294  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  230 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttattgggagaagaacaattttc 307  Q
    |||||||||| |||| ||| |||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacgtcttttttgggagaagagcaattttc 38299728  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 53801506 - 53801584
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttt 286  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || ||||||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgttttt 53801584  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 12828554 - 12828632
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttt 286  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttt 12828632  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaattttcaa 309  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| || ||||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  252 tattttggtcagtttatatgggagtgaacgt-ttttattgggagaagaacaattttcaa 309  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 30259706 - 30259628
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttt 286  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttt 30259628  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  222 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 278  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa-cgtttttattgggagaagaacaatttt 306  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| ||||||| | ||||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  307 c 307  Q
    |    
T  1706903 c 1706903  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  211 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaatttt 306  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  | ||||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 1706646 - 1706590
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgtttttattgggagaagaacaattttc 307  Q
    |||||||| ||||||| ||||  ||||| ||||||||||||||||||| ||||||||    
T  1706646 gtattttgatcagtttgtatgaaagtgagcgtttttattgggagaagagcaattttc 1706590  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  253 attttggtcagtttatatgggagtgaacg--tttttattgggagaagaacaattttcaa 309  Q
    |||||||||||||| ||||||||||||||  ||||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 1410698 - 1410783
Alignment:
Q  221 ttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttattgggagaagaacaattttc 307  Q
    ||||||||  ||||||||| ||||||| | |||||||| | ||||||||||| |||||  |||||| ||||||||||| ||||||||    
T  1410698 ttaccgaacatgagttaactcacgtggag-gtattttgattagtttatatggcagtgagtgttttttttgggagaagagcaattttc 1410783  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacg-tttttattgggagaagaacaattttc 307  Q
    |||||||||| ||||| |||||||||||||| |||||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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