View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2398_low_5 (Length: 319)
Name: NF2398_low_5
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2398_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 38841751 - 38841502
Alignment:
| Q |
8 |
ggacatcatcagacatgacatcagaacttgtacacggctactcgcaggtaccctcccgaatccgccctgtctttgacgggcaaaacacaaattgattgga |
107 |
Q |
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| T |
38841751 |
ggacctcatcagacatgacatcggaacttgtacacggctactcgcaggtaccctcccgaatccaccctgtctttgacgggcaaaacacaaattgattgga |
38841652 |
T |
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| Q |
108 |
tttgggttttccccgatttcaaaagacgggagttgggggaaactagggacactaatacctatctccgatcccgccttgcttgtatcaaaattccattatt |
207 |
Q |
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| T |
38841651 |
tttgggttttccccgatttcaaaagacgggagttgggggaaactagggacactaatacctatctccgatcccgccttgcttgtatcaaaattccattatt |
38841552 |
T |
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| Q |
208 |
atctctcttaaattagaaatcctcaaacaaacccttaaattacattcata |
257 |
Q |
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| T |
38841551 |
atctctcttaaattagaaatcctcaaacaaacccttaaattacattcata |
38841502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 38841472 - 38841414
Alignment:
| Q |
261 |
aagcaagtagtttcctctactttttgtttatagccctgtctagacttcactacaagtaa |
319 |
Q |
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| T |
38841472 |
aagcaagtagtttcctctactttttgtttatagccatgtctagacttcactacaagtaa |
38841414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 40754994 - 40754922
Alignment:
| Q |
185 |
gcttgtatcaaaattccattattatctctcttaaattagaaatcctcaaacaaacccttaaattacattcata |
257 |
Q |
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| T |
40754994 |
gcttgtatcaaaattacatttttacctctattaaattagaaaccctgaaacaaacccttaaattacattcata |
40754922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 16710781 - 16710825
Alignment:
| Q |
206 |
ttatctctcttaaattagaaatcctcaaacaaacccttaaattac |
250 |
Q |
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| T |
16710781 |
ttatctctctaaaattagaaatcctcaaacaaacgcttaaattac |
16710825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 17685017 - 17685061
Alignment:
| Q |
206 |
ttatctctcttaaattagaaatcctcaaacaaacccttaaattac |
250 |
Q |
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| T |
17685017 |
ttatctctctaaaattagaaatcctcaaacaaacgcttaaattac |
17685061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 31737826 - 31737893
Alignment:
| Q |
187 |
ttgtatcaaaattccattattatctctcttaaattagaaatcctcaaacaaacccttaaattacattc |
254 |
Q |
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| T |
31737826 |
ttgtatcaaagttacatttttatcacccttaaattagaaatcattaaacaaacccttaaattatattc |
31737893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 9402681 - 9402649
Alignment:
| Q |
99 |
ttgattggatttgggttttccccgatttcaaaa |
131 |
Q |
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| T |
9402681 |
ttgactggatttgggttttccccgatttcaaaa |
9402649 |
T |
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