View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2398_low_7 (Length: 244)
Name: NF2398_low_7
Description: NF2398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2398_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 14259929 - 14259725
Alignment:
| Q |
26 |
aacaaccagttatggaagcatttagccctt-gccatgttcaatcaagtaatgtaacataacataaatcttgaaccctcttgccaccggaatgtcgtgtaa |
124 |
Q |
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| T |
14259929 |
aacaaccagttatggaagcatttagccctttgccatgttcaatcaagtaatgtaacataacataaatcttgaaccctcttaccaccggaatatagtgtaa |
14259830 |
T |
|
| Q |
125 |
ataagttcactttgcgtaaagatactagatgatataaatagtacttcctccttttgggattttaagtgcttttgttaaatac--atgcattctacattgt |
222 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
14259829 |
ataagttcactttgcataaaaatactagatgatataaatagtacttcctcctttccggattttaagtgcttttgttaaatacatatgcattctacactgt |
14259730 |
T |
|
| Q |
223 |
tataa |
227 |
Q |
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||||| |
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| T |
14259729 |
tataa |
14259725 |
T |
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