View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2399_high_1 (Length: 628)
Name: NF2399_high_1
Description: NF2399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2399_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 37972295 - 37971855
Alignment:
| Q |
18 |
tacaacatataaattaaccgtgaaggatgttaacaagttaattgttatcttagttttatttttctcagactttaaatcctaaacttttaactcttcaact |
117 |
Q |
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|||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37972295 |
tacaacatataaattaactgtgaaggatgttaatatgttaattgttatcttagttttatttttctcagactttaaatcctaaacttttaactcttcaact |
37972196 |
T |
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| Q |
118 |
cttataatcccttagctcaaagcaatttagctactcaaccactgcagtttaagttgaataatgtttctgtttttcaattttttcatttcaagctgcagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37972195 |
cttataatcccttagctcaaagcaatttagctactcaaccactgcaatttaagttgaataatgtttctgtttttcaattttttcgtttcaagctgcagtt |
37972096 |
T |
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| Q |
218 |
tacgatcaagaatgtaagggatatgaaataagtaagaagaagaagcaataattattttactaaaacaaagtagtgataattatttagaaatatataaaat |
317 |
Q |
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| T |
37972095 |
tacgatcaagaatgtaagggatatgaaataagtaagaa---gaagcaatagttattttactaaaaaaaagtagtgataattatttagaaatatataaaat |
37971999 |
T |
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| Q |
318 |
tggaggtgtatgtacatatatctgttaagtgggtgtaagatatacccatgggccatgacgggctaatctaatacttgcttacaagcccaacatcaaaata |
417 |
Q |
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| T |
37971998 |
tggaggtgtatgtacatatatatgttaagtgggtgtaagatatac-------ccatgacgggctaatctaatacttgcatacaagcccaacatcaaaata |
37971906 |
T |
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| Q |
418 |
aaaagaagatgattataactttttccacctataagtttctcacgcgctcta |
468 |
Q |
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| T |
37971905 |
aaaagaagatggttataactttttccacctacaagtttctcaagcgctcta |
37971855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 623
Target Start/End: Complemental strand, 37971820 - 37971776
Alignment:
| Q |
579 |
ggagtcaataagattgctcaataggtccatcgaggttgttcatct |
623 |
Q |
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| T |
37971820 |
ggagtccataagattgctcaataggtccttcaaggttgttcatct |
37971776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 8406281 - 8406332
Alignment:
| Q |
88 |
tttaaatcctaaacttttaactcttcaactcttataatcccttagctcaaag |
139 |
Q |
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| T |
8406281 |
tttaaaccctagacctttaactcttcaactcttttaattccttagctcaaag |
8406332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 498
Target Start/End: Original strand, 55193457 - 55193527
Alignment:
| Q |
428 |
gattataactttttccacctataagtttctcacgcgctctattcaaatttttaaatccaaaatattttaac |
498 |
Q |
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| T |
55193457 |
gattattactttttccacctatgagtttctcgtgcgctctatttagattttaaaatatgaaatattttaac |
55193527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 40798071 - 40798129
Alignment:
| Q |
437 |
tttttcca-cctataagtttctcacgcgctctattcaaatttttaaatccaaaatattt |
494 |
Q |
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| T |
40798071 |
tttttccatcctataagtttgtcgcacgctctattcaaattttaaaattcaaaatattt |
40798129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 505
Target Start/End: Original strand, 25123224 - 25123293
Alignment:
| Q |
437 |
tttttccacc-tataagtttctcacgcgctctattcaaatttttaaatccaaaatattttaacgagtttt |
505 |
Q |
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| T |
25123224 |
tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttt |
25123293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 499
Target Start/End: Original strand, 43343929 - 43343961
Alignment:
| Q |
467 |
tattcaaatttttaaatccaaaatattttaacg |
499 |
Q |
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| T |
43343929 |
tattcaaattttaaaatccaaaatattttaacg |
43343961 |
T |
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