View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2399_low_2 (Length: 577)
Name: NF2399_low_2
Description: NF2399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2399_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 271 - 555
Target Start/End: Original strand, 47352359 - 47352642
Alignment:
| Q |
271 |
atggtggtggaatcactacatcagttctaattgataaattatgtcaatgttatgttgtttctattattatattttaggtttttgctgtttaaacttgaca |
370 |
Q |
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| T |
47352359 |
atggtggtggaatcactacatcagttctaattgataaattatgtcaatgttatgttgtttctattattatattttaggtttttgttgtttaaacttgaca |
47352458 |
T |
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| Q |
371 |
taaaaaacgtatgccttatggaatatatattaaattgctcttttatttgatgtcttgatttattgttgctatcttaattaaagaatatatatagtagtct |
470 |
Q |
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| T |
47352459 |
taaaaat-gtatgccttatggaatatatattaaattgctcttttatttgatgtcttgatttattgttgctatcttaattaaagaatatatatagtagtct |
47352557 |
T |
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| Q |
471 |
tgagcaagaccaaccctaaaatttattgtgcccctacaactaaagtaatggcacctctgtcttaatcatattttagaattctttc |
555 |
Q |
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| T |
47352558 |
tgagcaagaccaaccctaaaatttcttgtgcccctacaactaaagtaatggcacctctgtcttaatcatattttagaattctttc |
47352642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 47352115 - 47352263
Alignment:
| Q |
16 |
attgcaacaatgcaacaacagcatagaccgtccctaactcacttggattggcctagaggtatggcttggaatttaggagtatgcttcttcataaggtctc |
115 |
Q |
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| T |
47352115 |
attgcaacaatgcaacaacaacatagaccgttcctaacccacctgggttggtctagaggtatggcttggaatttgggagtgtgcttctccataaggtatc |
47352214 |
T |
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| Q |
116 |
aggttcaattctatttagtgttaatttaggtgaactaatttaacttatt |
164 |
Q |
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| T |
47352215 |
acactcgattctctttggtgtcaatttaagtgaactaatttaacttatt |
47352263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 47386819 - 47386760
Alignment:
| Q |
98 |
gcttcttcataaggtctcaggttcaattctatttagtgttaatttaggtgaactaattta |
157 |
Q |
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|||||||| | ||||||||||||||||||| | |||||| |||||||||| |||||||| |
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| T |
47386819 |
gcttcttcttgaggtctcaggttcaattctctctagtgtcaatttaggtgggctaattta |
47386760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 27989733 - 27989662
Alignment:
| Q |
51 |
aactcacttggattggcctagaggta-tggcttggaatttaggagtatgcttcttcataaggtctcaggttc |
121 |
Q |
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| T |
27989733 |
aactcacttggattggcctagtggtattagcttggaacttgggagtatgctccttcttaaggtttcaggttc |
27989662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 22786063 - 22786014
Alignment:
| Q |
108 |
aaggtctcaggttcaattctatttagtgttaatttaggtgaactaattta |
157 |
Q |
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| T |
22786063 |
aaggtctcatgttcaattctctttggtgccaatttaggtgaactaattta |
22786014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 9577898 - 9577947
Alignment:
| Q |
112 |
tctcaggttcaattctatttagtgttaatttaggtgaactaatttaactt |
161 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
9577898 |
tctcaggttcaattccctctagtgttaatttaggtgtgctaatttaactt |
9577947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 52770000 - 52769952
Alignment:
| Q |
109 |
aggtctcaggttcaattctatttagtgttaatttaggtgaactaattta |
157 |
Q |
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| T |
52770000 |
aggtctcaggttcgattctctttagtgtcaatttaggtgggctaattta |
52769952 |
T |
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