View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2399_low_5 (Length: 203)
Name: NF2399_low_5
Description: NF2399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2399_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 39692738 - 39692815
Alignment:
| Q |
109 |
atgtacgtgtatttatttatatacacgaacgcatacacgctattctatgtagtataacttttggtaaatatacttagc |
186 |
Q |
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| T |
39692738 |
atgtacgtgtatttatttatacacacgaacgcatacacgctattctatgtagtataacttttggtaaatatacttagc |
39692815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 39692615 - 39692720
Alignment:
| Q |
16 |
aatattaaatgagtcttataaaaaatgacaacttttttcaaaagggtcgtataattagggagagatgtagcacatttattcttttaattagtgatgtacg |
115 |
Q |
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| T |
39692615 |
aatatcaaatgagtcatataaaaag-gacaacttttttcaaaagagttgtataattaggaaggaatgttgtatatttattcgtttaattagtgatgtacc |
39692713 |
T |
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| Q |
116 |
tgtattt |
122 |
Q |
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||||||| |
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| T |
39692714 |
tgtattt |
39692720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 32908355 - 32908409
Alignment:
| Q |
22 |
aaatgagtcttataaaaaatgacaacttttttcaaaagggtcgtataattaggga |
76 |
Q |
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| T |
32908355 |
aaataagtcttataaaaagggacaatttttttcaaaagggtcttataattaggga |
32908409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 45809902 - 45809959
Alignment:
| Q |
28 |
gtcttataaaaaatgacaacttttttcaaaagggtcgtataattagggagagatgtag |
85 |
Q |
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| T |
45809902 |
gtcttataaaaagggacaatttttttcaaaaagatcttataattagggacagatgtag |
45809959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 1450501 - 1450538
Alignment:
| Q |
48 |
ttttttcaaaagggtcgtataattagggagagatgtag |
85 |
Q |
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| T |
1450501 |
ttttttcaaaagggtcttataattagggacagatgtag |
1450538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 4564296 - 4564248
Alignment:
| Q |
28 |
gtcttataaaaaatgacaacttttttcaaaagggtcgtataattaggga |
76 |
Q |
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|||||||||||| ||||| |||||||||||| ||| |||||||||||| |
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| T |
4564296 |
gtcttataaaaagggacaatttttttcaaaagagtcttataattaggga |
4564248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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