View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2438_high_8 (Length: 229)
Name: NF2438_high_8
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2438_high_8 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41795100 - 41795318
Alignment:
| Q |
1 |
aaaagaaagatgaacatta-cctcaaacttgaaatgtagtaggtctttaagcttctaaaggcaaagcataaaatactaatttcttgttagaggtacaaat |
99 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41795100 |
aaaagaaagatgaacactatcctcaaacttgaaatgtagtaggtctttaagcttctaaaggcaaagcataaaatactaatttcttgttagacgtacaaat |
41795199 |
T |
|
| Q |
100 |
gttgaacttttgttagaaattagagacaaaaaactaatcttcaatttagatacttactgataattcaacttcttttaacaagcttaaaaataacatagag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
41795200 |
gttgaacttttgttagaaattagagacaaaaaattaatcttgaatttagatacttactgatagttcaact-----------gcttaaaaataacatagag |
41795288 |
T |
|
| Q |
200 |
agatacatgaacaaatatgtgagattatgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41795289 |
agatacatgaacaaatatgtgagattatgt |
41795318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University