View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2438_low_1 (Length: 475)
Name: NF2438_low_1
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2438_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 28850326 - 28850169
Alignment:
| Q |
10 |
catcatcaccccaaataaaacctctttgcaacttctgaatctcatgaagatacgatttaggaataacacaactcatcatcggataaataggaactgcttc |
109 |
Q |
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| T |
28850326 |
catcctcaccccaaataaaatctctttgcaacttctgaatctcataaagacacgatttaggaataacacaactcatcatcggataaataaaaactgcttc |
28850227 |
T |
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| Q |
110 |
aataaatgatttagcaaaagtcactctaccagcaaaggaaagatgttttgctttccat |
167 |
Q |
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| T |
28850226 |
aataactgatttagcaagagtcactcaaccgacaaaggaaagatgttttgctatccat |
28850169 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 21311110 - 21311199
Alignment:
| Q |
119 |
tttagcaaaagtcactctaccagcaaaggaaagatgttttgctttccatgacaccagtttatttctcacttgatcaataatatactgaaa |
208 |
Q |
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| T |
21311110 |
tttagccaaagtaactctccctggaaaggaaagttgtttagctttccaggccataagcttattgctgacttgatcaacaatatactgaaa |
21311199 |
T |
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