View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2438_low_15 (Length: 215)
Name: NF2438_low_15
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2438_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1716960 - 1717157
Alignment:
| Q |
1 |
tgcatctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcat |
100 |
Q |
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| T |
1716960 |
tgcatctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcat |
1717059 |
T |
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| Q |
101 |
gagaatacacatccatttgtgcttggacatatctttggtagtcttgcataggcgccccttctatactccattcagctgtccattcccctacccaaata |
198 |
Q |
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| T |
1717060 |
gagaatacacatccatttgtgcttggacatatctttggtagtcttgcataggtgccccttgtatactccattcagctgtccattcccctacccaaata |
1717157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 1738368 - 1738563
Alignment:
| Q |
3 |
catctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcatga |
102 |
Q |
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| T |
1738368 |
catctagagctttatgtaaccattttcgatcaaccacttgagactccatttgttattctgacatttataggaccaaaaagcccatccaaatgttgcacga |
1738467 |
T |
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| Q |
103 |
gaatacacatccatttgtgcttggacatatctttggtagtcttgcataggcgccccttctatactccattcagctgtccattcccctacccaaata |
198 |
Q |
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| T |
1738468 |
gaatatacatccatttgtgtttggacatatctttggtagtcttgcatagacgcaccttgtatgctccattcagccgtccattcccctaccaaaata |
1738563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 1753514 - 1753662
Alignment:
| Q |
3 |
catctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcatga |
102 |
Q |
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| T |
1753514 |
catctagagctttatgtaaccattctcgatcatccacttgagactccaatggttatattgacatttgtatgcccaataagcccatccaaatgttgcacga |
1753613 |
T |
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| Q |
103 |
gaatacacatccatttgtgcttggacatatctttggtagtcttgcatag |
151 |
Q |
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| T |
1753614 |
gaatacacatctagttgtgcttggccatatctttggtagtcttgcatag |
1753662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 1748265 - 1748381
Alignment:
| Q |
10 |
agctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcatgagaataca |
109 |
Q |
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| T |
1748265 |
agctttatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgcccgagaataca |
1748364 |
T |
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| Q |
110 |
catccatttgtgcttgg |
126 |
Q |
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| T |
1748365 |
catccaattgggcttgg |
1748381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 38086985 - 38087047
Alignment:
| Q |
33 |
caaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgt |
95 |
Q |
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| T |
38086985 |
caaccacttaagactccagttgttagagtcacatttgtaagcccaatatgcccatccaaatgt |
38087047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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