View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2438_low_17 (Length: 206)
Name: NF2438_low_17
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2438_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 37591201 - 37591013
Alignment:
| Q |
3 |
tctaatcaaacttctttaaaactgtcatccaaatcaaaccacatgtgatttttattttggatcggattattgtttcaaaacctatccaaattacatctta |
102 |
Q |
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| T |
37591201 |
tctaatcaaacttctttaaaaatgtcatccaaatcaaaccacatgtgatttttattttggatcggattattgtttcaaaacctatccaaattacatcgta |
37591102 |
T |
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| Q |
103 |
aacatccatagtctctataattatataattgttattttttgattatatgcacttttggtcctattaaaagataagaattaatgattaat |
191 |
Q |
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| T |
37591101 |
aacatccatagtctccataattatataattgttattttttgattatatgcacttttggtcctattaaaagataagaattaatgattaat |
37591013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 42295449 - 42295421
Alignment:
| Q |
39 |
aaccacatgtgatttttattttggatcgg |
67 |
Q |
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| T |
42295449 |
aaccacatgtgatttttattttggatcgg |
42295421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 11619686 - 11619634
Alignment:
| Q |
17 |
tttaaaactgtcatccaaatcaaaccacatgtgatttttattttggatcggat |
69 |
Q |
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| T |
11619686 |
tttaaaatagtcgtccaaaccgaaccacatgtgatttttattttggatcggat |
11619634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 10416231 - 10416274
Alignment:
| Q |
26 |
gtcatccaaatcaaaccacatgtgatttttattttggatcggat |
69 |
Q |
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| T |
10416231 |
gtcatccaaaccaaaccgcatgtaatttttattttggatcggat |
10416274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 40044610 - 40044653
Alignment:
| Q |
26 |
gtcatccaaatcaaaccacatgtgatttttattttggatcggat |
69 |
Q |
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| T |
40044610 |
gtcatccaaaccgaaccgcatgtgatttttattttggatcggat |
40044653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 42199812 - 42199772
Alignment:
| Q |
29 |
atccaaatcaaaccacatgtgatttttattttggatcggat |
69 |
Q |
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| T |
42199812 |
atccaaattaaaccgcatgtgatttttattttggaccggat |
42199772 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 25393093 - 25393133
Alignment:
| Q |
29 |
atccaaatcaaaccacatgtgatttttattttggatcggat |
69 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |
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| T |
25393093 |
atccaaaccaaactgcatgtgatttttattttggatcggat |
25393133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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