View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2438_low_3 (Length: 398)
Name: NF2438_low_3
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2438_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 38 - 270
Target Start/End: Complemental strand, 50609726 - 50609494
Alignment:
| Q |
38 |
ctatatgttgagatcagacagattaattattgtgtgtgaaaatgttttttaacttggtggaagaagtttggtatttggtgagcttttaaatattgcattt |
137 |
Q |
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| T |
50609726 |
ctatatgttgagatcagacagattaattattgtgtgtgaaaatgttttttaacttggtgaaagaagtttggtatttggtaagcatttaaatattgcattt |
50609627 |
T |
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| Q |
138 |
atgtgatagaagatattgaccgagagtagagattcaaatgttgagaaaatggtggttgtgcctgtgtcagagtgctctacttgtaaataccccaatgaca |
237 |
Q |
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| T |
50609626 |
atgtgatagaagatattgaccgagagaagagattcaaatgttgagaaaatggtggttgtgcctgtgtcagtgtgctctacttgtaaataccccaatgaca |
50609527 |
T |
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| Q |
238 |
aagttattggatgaatttggggtgtttgtggtt |
270 |
Q |
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| T |
50609526 |
aagttattggatgaatttggggtgtttgtggtt |
50609494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 50609449 - 50609332
Alignment:
| Q |
269 |
ttaaaatgacaaacggttcagttcggtttgaattgctccatgaaaatctaatctgatcaaaagcaatttggattagactgattcatttgattttatgatg |
368 |
Q |
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| T |
50609449 |
ttaaaatgacaaacggttcagttcggtttgaattgcttcatgaaaatctaatctgatcaaaagcaatttggattagactgattcatttgattttatgatg |
50609350 |
T |
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| Q |
369 |
gtacatttatactatgtc |
386 |
Q |
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| T |
50609349 |
gtatatttatactatgtc |
50609332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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