View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2438_low_5 (Length: 350)
Name: NF2438_low_5
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2438_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 44451470 - 44451802
Alignment:
| Q |
1 |
gagcggccattctctttgtccgaagttttcctcttaaaaaatgcatcaattttcttaagtttaaccattgtattgtattgctcctaaaaaacacgcaaat |
100 |
Q |
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| T |
44451470 |
gagcagccattctctttgtccaaagttttcctcttaaaaaatgcatcaattttcttaagtttaaccattgtattgtattgctcctaaaaaacacgcaaat |
44451569 |
T |
|
| Q |
101 |
caattactaataacatagagtagtaagacttttgttaagcaacattgattaaaaaatgcacaataatagtaacgatatgaggaagagagaattcattgtt |
200 |
Q |
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| T |
44451570 |
caattactaataacatagagtagtaagacttttgttaagcaacattgattaaaaaatgcacaataatagtaacgatatgaggaagagagaattcattgtt |
44451669 |
T |
|
| Q |
201 |
ttcttttcttcattccaataacaatcaccatacaatgtagaatggt-nnnnnnntcaattaaaaccgacaatttcaatcaagcagtattgttcagaaatg |
299 |
Q |
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| T |
44451670 |
ttcttttcttcatttcaatgacaatcaccatacaatgtagaatggtaaaaaaaatcaattaaaaccgacaatttcaatcaagcagtattgttcagaaatg |
44451769 |
T |
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| Q |
300 |
gaagatgaggaaaagaaggtgaaaatgacaaca |
332 |
Q |
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| T |
44451770 |
gaagatgaggaaaagaaggtgaaaatgacaaca |
44451802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 42192065 - 42192151
Alignment:
| Q |
27 |
tttcctcttaaaaaa-tgcatcaattttcttaagtttaaccattgtattgtattgctcctaaaaaacacgcaaatcaattactaataacata |
117 |
Q |
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| T |
42192065 |
tttcctcttaaaaaaatgcatcaattttgttatgtttaaccattgtatca-----ctcgtaaaaaacacacaaatcaaatactaataacata |
42192151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 44353983 - 44353940
Alignment:
| Q |
27 |
tttcctcttaaaaaatgcatcaattttcttaagtttaaccattg |
70 |
Q |
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| T |
44353983 |
tttcctcttacaaaatgcatccattttcttatgtttaaccattg |
44353940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 62092 - 62056
Alignment:
| Q |
37 |
aaaaatgcatcaattttcttaagtttaaccattgtat |
73 |
Q |
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| T |
62092 |
aaaaatgcatcaattttcttatgtttgaccattgtat |
62056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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