View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2438_low_6 (Length: 333)

Name: NF2438_low_6
Description: NF2438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2438_low_6
NF2438_low_6
[»] chr3 (11 HSPs)
chr3 (19-323)||(20045645-20045949)
chr3 (20-323)||(19818077-19818383)
chr3 (93-325)||(20016489-20016721)
chr3 (23-323)||(19811806-19812106)
chr3 (107-323)||(19955685-19955901)
chr3 (23-303)||(26646536-26646816)
chr3 (88-323)||(19989110-19989348)
chr3 (149-291)||(20036930-20037072)
chr3 (143-230)||(19838030-19838117)
chr3 (149-229)||(19848639-19848719)
chr3 (176-230)||(19950803-19950857)
[»] chr5 (1 HSPs)
chr5 (89-291)||(9814629-9814831)
[»] chr1 (1 HSPs)
chr1 (72-138)||(1716786-1716852)
[»] chr7 (2 HSPs)
chr7 (19-60)||(12520037-12520078)
chr7 (19-60)||(12580326-12580367)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 20045645 - 20045949
Alignment:
Q  19 actcaaacctattgcaaaatcaattgatgaaccaactcttgagtttaaccaattttcatcatcttttgattttgatccaaaggaatggcctttgaaaatc 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20045645 actcaaacctattgcaaattcaattgatgaaccaactcttgagtttaaccaattttcatcatcttttgattttgaaccaaaggaatggcctttgaaaatc 20045744  T
Q  119 aacttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  20045745 aacttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaaatttgaatcggtgtggaaggaagttggaatctttg 20045844  T
Q  219 aagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgctgtgatacaaacacatttatttttcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  20045845 aagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgttgtgatacaaatacatttatttttcc 20045944  T
Q  319 ctttg 323  Q
    |||||    
T  20045945 ctttg 20045949  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 19818077 - 19818383
Alignment:
Q  20 ctcaaacctattgcaaaatcaattgatgaaccaactcttgagtttaaccaattttcatcatcttt---tgattttgatccaaaggaatggcctttgaaaa 116  Q
    ||||| ||| ||||||| || |||||||||||| || ||||| |||| | ||||||||||||||    || |||||||||||| || || ||||||||||    
T  19818077 ctcaagcctgttgcaaactccattgatgaaccaccttttgagcttaatccattttcatcatcttcatctgtttttgatccaaatgagtgtcctttgaaaa 19818176  T
Q  117 tcaacttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctt 216  Q
    |  | |||| ||| |||||||| |  ||| | |||||| |||||||| ||||| |||| |||||||||| |||||| || |||||| ||| | |||||||    
T  19818177 tacatttcaatggatggcgccaacaacaagagaaatggtttagttgggttgatgaacttaaaccaaagtatgaatctgtgtggaagaaagctagaatctt 19818276  T
Q  217 tgaagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgctgtgatacaaacacatttattttt 316  Q
    ||| ||||||||||   | || || | ||||| ||||||||| ||||| |||   |||||||| ||||||||||| ||||| || ||||| ||| |||||    
T  19818277 tgatgctattatgagtactaaatgctacattcataaaaatcaaaacttgctatttggggttgttgagaaatggtgttgtgagactaacacctttgttttt 19818376  T
Q  317 ccctttg 323  Q
    || ||||    
T  19818377 ccatttg 19818383  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 325
Target Start/End: Complemental strand, 20016721 - 20016489
Alignment:
Q  93 atccaaaggaatggcctttgaaaatcaacttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatc 192  Q
    |||||||||| | |||||||||  |  | |||||||||||||||||||| ||| | ||||||||| ||||| ||||| | || ||| |||||| ||||||    
T  20016721 atccaaaggagtcgcctttgaagtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaaaacaaagtatgaatc 20016622  T
Q  193 agtttggaaggaagttggaatctttgaagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgc 292  Q
     || |||||| | |||||||||||||| |||||||||| | | |||||| |||| || | |||||| ||||| ||| | | ||||| ||||||||||||     
T  20016621 tgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgt 20016522  T
Q  293 tgtgatacaaacacatttatttttccctttgct 325  Q
    | | | ||||| |||||| | ||||| ||||||    
T  20016521 tctaagacaaatacatttgtgtttccatttgct 20016489  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 19811806 - 19812106
Alignment:
Q  23 aaacctattgcaaaatcaattgatgaaccaactcttgagtttaaccaattttcatcatcttttgattttgatccaaaggaatggcctttgaaaatcaact 122  Q
    ||||| ||| |||| || ||| |||||||| || |||||||||| | |||||||||||||| |  |||||||| ||| || || |||||||||||| | |    
T  19811806 aaacccatttcaaactccattcatgaaccagcttttgagtttaatccattttcatcatcttctttttttgatcaaaatgagtgtcctttgaaaatccatt 19811905  T
Q  123 tcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctttgaagc 222  Q
    ||| ||| ||||| ||||| ||| | || |||||||| ||| ||||| | || |||||||||| ||||||  | |||||| ||| | |||||||||| ||    
T  19811906 tcagtggatggcgtcacccacaagagaagtgggttagatgggttgatgagcttaaaccaaagtatgaatctttgtggaagaaagctagaatctttgatgc 19812005  T
Q  223 tattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgctgtgatacaaacacatttatttttcccttt 322  Q
    ||||||||   | ||||||  ||| || |||||||  || || ||    |||||||| ||||||||||| ||||| || ||||| ||| ||||||| |||    
T  19812006 tattatgagtaccaagtgtcacatactcaaaaatctaaaattgctctttggggttgttgagaaatggtgttgtgagactaacacctttgtttttccattt 19812105  T
Q  323 g 323  Q
    |    
T  19812106 g 19812106  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 323
Target Start/End: Original strand, 19955685 - 19955901
Alignment:
Q  107 cctttgaaaatcaacttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaag 206  Q
    ||||||||||||||||||||||| ||||||| | | ||| | |||||||||  |||| || ||||||| |||| ||||| |||||| ||||||| | |||    
T  19955685 cctttgaaaatcaacttcactggctggcgcctcacacaaaagaaatgggtttcttgggttcataaacttaaacaaaagtatgaatctgtttggaggaaag 19955784  T
Q  207 ttggaatctttgaagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgctgtgatacaaacac 306  Q
    ||||||||||||| ||||| ||||   | || || | ||||| ||||||| | ||||| |||   || ||||| ||||||||||| ||||| ||||| ||    
T  19955785 ttggaatctttgatgctataatgagtactaaatgctacattcataaaaataaaaacttgctatttggagttgttgagaaatggtgttgtgagacaaatac 19955884  T
Q  307 atttatttttccctttg 323  Q
    |||| | ||||| ||||    
T  19955885 atttgtgtttccatttg 19955901  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 26646536 - 26646816
Alignment:
Q  23 aaacctattgcaaaatcaattgatgaaccaactcttgagtttaaccaattttcatcatcttttgattttgatccaaaggaatggcctttgaaaatcaact 122  Q
    ||||| ||||||||  | ||| |||||||| || |||||||||| ||||  ||| | |||| || |||||| |||||||| |||||||||||||||||||    
T  26646536 aaaccaattgcaaacaccattcatgaaccagcttttgagtttaaacaatcatcaccgtcttctgtttttgaaccaaaggagtggcctttgaaaatcaact 26646635  T
Q  123 tcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctttgaagc 222  Q
    ||||||| ||||| | ||| |     ||||||||||| ||| ||||| |||| ||||  || | |||| |||| |||||| ||||||| |||||||||||    
T  26646636 tcactggttggcgtcgcccacgcgccaaatgggttagatgggttgatcaacttaaactcaaatatgaaacagtgtggaagaaagttggcatctttgaagc 26646735  T
Q  223 tattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgctgtgatacaaa 303  Q
     || |||  | ||| |||  |||| | |||||||||  |||| ||| | ||||| || ||||||||||| ||||| |||||    
T  26646736 aataatgggcacaaggtgccgcatacataaaaatcatgacttgctatatggggtagttgagaaatggtgttgtgagacaaa 26646816  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 323
Target Start/End: Original strand, 19989110 - 19989348
Alignment:
Q  88 ttttgatccaaaggaatggcctttgaaaatcaacttcactgggtggcgccaccctc-aaca--aaaatgggttagttggcttgataaactcaaaccaaag 184  Q
    |||||| ||| |||| |||||||||||||||||||||| ||| ||||  | |||   ||||  ||||||||||  |||| ||||| |||| ||||| ||     
T  19989110 ttttgacccagaggagtggcctttgaaaatcaacttcattggatggccacgccccgtaacagaaaaatgggtttattgggttgatcaacttaaacccaaa 19989209  T
Q  185 tttgaatcagtttggaaggaagttggaatctttgaagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggaga 284  Q
    |||||||  || |||||| ||||||| |||||||||||||||||||   | |||||||||||    ||| |||| ||||| |||   |||||||| ||||    
T  19989210 tttgaatatgtgtggaagaaagttggcatctttgaagctattatgagtaccaagtgttgcataaagaaagatcataacttgctatttggggttgttgaga 19989309  T
Q  285 aatggtgctgtgatacaaacacatttatttttccctttg 323  Q
    ||||||| ||||| |||||||||||| ||||||| ||||    
T  19989310 aatggtgttgtgagacaaacacatttgtttttccatttg 19989348  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 291
Target Start/End: Complemental strand, 20037072 - 20036930
Alignment:
Q  149 aaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctttgaagctattatgaactcaaagtgttgcattc 248  Q
    |||||||||  |||| || ||||||| |||| ||| | |||||| || |||||| |||||||||||||||| |||||||||  | | ||||||| ||| |    
T  20037072 aaatgggtttcttgggttcataaacttaaacaaaactatgaatctgtgtggaagaaagttggaatctttgatgctattatggccactaagtgttacatac 20036973  T
Q  249 ttaaaaatcagaacttactacaaggggttgtggagaaatggtg 291  Q
     |||| |||| ||||| ||| | ||||||||||||||||||||    
T  20036972 ataaagatcaaaacttgctatatggggttgtggagaaatggtg 20036930  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 19838030 - 19838117
Alignment:
Q  143 caacaaaaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctttgaagctattatga 230  Q
    ||||| ||||||||| ||||| ||||||| || |||||||||| |||||| ||||||| | |||||||||||||||| ||||| ||||    
T  19838030 caacacaaatgggtttgttgggttgataagcttaaaccaaagtatgaatctgtttggaggaaagttggaatctttgatgctataatga 19838117  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 19848639 - 19848719
Alignment:
Q  149 aaatgggttagttggcttgataaactcaaaccaaagtttgaatcagtttggaaggaagttggaatctttgaagctattatg 229  Q
    |||||||||  |||| || ||||||| |||| ||| | |||||| || |||||| |||||||||||||||| |||||||||    
T  19848639 aaatgggtttcttgggttcataaacttaaacaaaactatgaatctgtgtggaagaaagttggaatctttgatgctattatg 19848719  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 19950803 - 19950857
Alignment:
Q  176 aaaccaaagtttgaatcagtttggaaggaagttggaatctttgaagctattatga 230  Q
    |||||||||| |||||| || |||||| ||| |||||||||||| ||||||||||    
T  19950803 aaaccaaagtatgaatctgtgtggaagaaagctggaatctttgatgctattatga 19950857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 9814629 - 9814831
Alignment:
Q  89 tttgatccaaaggaatggcctttgaaaatcaacttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaagtttg 188  Q
    ||||||||||| || |||||||||||| || | |||| ||| |||||  |||| ||| | |||||| ||  |||| ||||| |||| |||||||||| ||    
T  9814629 tttgatccaaatgagtggcctttgaaattccatttcaatggatggcgttacccacaagagaaatggatttattgggttgatcaacttaaaccaaagtatg 9814728  T
Q  189 aatcagtttggaaggaagttggaatctttgaagctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatg 288  Q
    ||||  | |||||| |||| || |||||||| ||||| ||||   | |||||  ||||  | ||| |||| ||||| ||| | |||||||| ||||||||    
T  9814729 aatctttgtggaagaaagtaggtatctttgatgctataatgagtaccaagtgccgcataatgaaagatcaaaacttgctatatggggttgttgagaaatg 9814828  T
Q  289 gtg 291  Q
    |||    
T  9814829 gtg 9814831  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 1716786 - 1716852
Alignment:
Q  72 tttcatcatcttttgattttgatccaaaggaatggcctttgaaaatcaacttcactgggtggcgcca 138  Q
    ||||||||||||||| || ||| ||||| || ||||||||||||||| | |||| ||||||||||||    
T  1716786 tttcatcatcttttgtttctgaaccaaatgattggcctttgaaaatccatttcaatgggtggcgcca 1716852  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 12520037 - 12520078
Alignment:
Q  19 actcaaacctattgcaaaatcaattgatgaaccaactcttga 60  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  12520037 actcaaacctattgcaaattccattgatgaaccaactcttga 12520078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 12580326 - 12580367
Alignment:
Q  19 actcaaacctattgcaaaatcaattgatgaaccaactcttga 60  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  12580326 actcaaacctattgcaaattccattgatgaaccaactcttga 12580367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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