View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2439_low_2 (Length: 287)
Name: NF2439_low_2
Description: NF2439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2439_low_2 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 158 - 287
Target Start/End: Complemental strand, 3001169 - 3001040
Alignment:
| Q |
158 |
gactaatcgtcactgcaaataattcatcctataagcatatatcctagcagccatagcagatcttcagctaaaatgaaaacatattgataaacaaaggaaa |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3001169 |
gactaatcgtcactgcaaataattcatcctataagcatatatcctagcagccatagcagatcttcagctaaaatgaaaacatattaataaacaaaggaaa |
3001070 |
T |
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| Q |
258 |
aatctagccaatcaaaacaggccaacacaa |
287 |
Q |
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| T |
3001069 |
aatcttgccaatcaaaacaggccaacacaa |
3001040 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 3001322 - 3001238
Alignment:
| Q |
5 |
ataatatacaagcactatttcttaggtgacacattctggtattggaaaaggtaacagtgaaaacagcacagtaccaattttcaat |
89 |
Q |
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| T |
3001322 |
ataaaatacaagcactatttcttaggtcacacattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaat |
3001238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 287
Target Start/End: Complemental strand, 32706675 - 32706545
Alignment:
| Q |
158 |
gactaatcgtcactgcaaataattcatcctataagcatatatcctagcagccatagcagatcttcagctaaaatgaaaacatattgataaac-aaaggaa |
256 |
Q |
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|||||||| | |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||||| |
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| T |
32706675 |
gactaatcatgactgcacataattcatcctataagcctatatcctagcagccatagcagatattcagctaaaatgaaagcatattaataaacaaaaggaa |
32706576 |
T |
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| Q |
257 |
aaatctagccaatcaaaacaggccaacacaa |
287 |
Q |
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| T |
32706575 |
aaatcttgcatatcaaaacaggccaacacaa |
32706545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 32706798 - 32706741
Alignment:
| Q |
36 |
cattctggtattggaaaaggtaacagtgaaaacagcacagtaccaattttcaatctct |
93 |
Q |
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||||||| ||| |||||| |||| |||||||||||| ||||| ||||||||||||||| |
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| T |
32706798 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctct |
32706741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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