View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2439_low_3 (Length: 252)
Name: NF2439_low_3
Description: NF2439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2439_low_3 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 5289788 - 5289541
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5289788 |
aaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggag |
5289689 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289688 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
5289589 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289588 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
5289541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 5310428 - 5310675
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5310428 |
aaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggag |
5310527 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310528 |
ctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
5310627 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310628 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
5310675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 5284339 - 5284586
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5284339 |
aaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggag |
5284438 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5284439 |
ccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtacttcgttt |
5284538 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284539 |
ggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgt |
5284586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 5302527 - 5302774
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
5302527 |
aaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcccgaag |
5302626 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302627 |
ctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
5302726 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302727 |
ggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgt |
5302774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 5315142 - 5315389
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5315142 |
aaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgttgacatgcctggag |
5315241 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| |||||||||||||| ||||| || |||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
5315242 |
cagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgctccgttt |
5315341 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315342 |
ggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
5315389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 46707079 - 46706832
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
46707079 |
aaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattacccacttaatcgtttgcactactagtggtgtagacatgcctggag |
46706980 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| |
|
|
| T |
46706979 |
ctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggggcttcgttt |
46706880 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| || |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
46706879 |
ggctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgt |
46706832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 32531019 - 32530975
Alignment:
| Q |
85 |
tggtgtagacatgcctggagccgattatcaactcacaaaactctt |
129 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
32531019 |
tggtgtagacatgccgggtgccgattaccaactcactaaactctt |
32530975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 44128605 - 44128852
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44128605 |
aaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctggag |
44128704 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
44128705 |
ctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgttt |
44128804 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44128805 |
ggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgt |
44128852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 44132810 - 44133057
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44132810 |
aaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctggag |
44132909 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
44132910 |
ctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgttt |
44133009 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44133010 |
ggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgt |
44133057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 44141232 - 44141479
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44141232 |
aaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctggag |
44141331 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
44141332 |
ctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgttt |
44141431 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44141432 |
ggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgt |
44141479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 1492199 - 1492446
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
1492199 |
aaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagcggtgtagacatgcctgggg |
1492298 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1492299 |
ccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccagcaaggttgttttgcaggtggcacggtacttcgttt |
1492398 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1492399 |
ggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgt |
1492446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 1478030 - 1478277
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||| | |
|
|
| T |
1478030 |
aaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagattacacacttgatcttttgcaccacaagtggtgtagacatgcctggcg |
1478129 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1478130 |
ctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaacaaggatgttttgcaggtgggacggtgcttcgttt |
1478229 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1478230 |
ggccaaggacttggctgagaacaataaaggtgctcgtgtgttggttgt |
1478277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 1505008 - 1505255
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
||||||||||| || || || ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1505008 |
aaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaattgtttgcaccacaagtggtgtagacatgcctggag |
1505107 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1505108 |
ctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttcgttt |
1505207 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1505208 |
ggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgt |
1505255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 1482224 - 1482471
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| |||| || ||||||||||||||||||||||| | |
|
|
| T |
1482224 |
aaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagattacacacttaatattttgtaccacaagtggtgtagacatgcctggtg |
1482323 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
1482324 |
ccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaacaaggatgctttgcaggtgggacggtgcttcgttt |
1482423 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||| || ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1482424 |
ggccaaggacttggctgagaataataaaggtgctcgtgtgttggttgt |
1482471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 1499271 - 1499518
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcacaca-agtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| |||||||| ||||| || ||||| ||||||| | |||||||||||||||||||| | |
|
|
| T |
1499271 |
aaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacacatttaattttttgcacctatagtggtgtagacatgcctggtg |
1499370 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
| ||||| ||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||| || || |||||||| |
|
|
| T |
1499371 |
cggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtaccaactagggtgttatgcaggtggaacagtacttcgttt |
1499470 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
||| || || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
1499471 |
ggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
1499518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 1509158 - 1509402
Alignment:
| Q |
9 |
gaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggagccg |
107 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||| ||||||| ||||||||||| || ||| ||||||| |
|
|
| T |
1509158 |
gaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagattacacatttaatcttttgcaccacaagtggtgttgatatgtctggagctc |
1509257 |
T |
|
| Q |
108 |
attatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggc |
207 |
Q |
| |
|
|||||||||| || ||||| || ||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
1509258 |
attatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaacaaaggtgttttgcaggtggcactgtgcttcatttggc |
1509357 |
T |
|
| Q |
208 |
caaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|| ||||||||||| || ||| ||| |||||||||||||||||| |
|
|
| T |
1509358 |
aaaggatttggctgaaaataaccaagatgctcgtgtgttggttgt |
1509402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 1486704 - 1486945
Alignment:
| Q |
9 |
gaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggagccg |
107 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| |||||||||||||||||||| |||||||| ||||||| | |||||| ||| ||||||||| |||| |
|
|
| T |
1486704 |
gaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagattacacacttaatattttgcaccatgagtggtataggcatgcctggtgccg |
1486803 |
T |
|
| Q |
108 |
attatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggc |
207 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | || |||||||| |||||||||| ||||||||||| || |||||||| ||||| || || |||| ||| |
|
|
| T |
1486804 |
attaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatatgatataccaacaaggatgctttgcagggggcactgttctacgttaggc |
1486903 |
T |
|
| Q |
208 |
caaagatttggctgagaacaacaaaggtgctcgtgtgttggt |
249 |
Q |
| |
|
||| || |||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
1486904 |
caaggacttggctgagaacaataaagatgctcttgtgttggt |
1486945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 24163881 - 24163634
Alignment:
| Q |
6 |
aaggaggctgcagtgaaggcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggag |
104 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||| | |||||||||||| |||||||| | |
|
|
| T |
24163881 |
aaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacacacttaatattttgcactataagtggtgtagatatgcctggtg |
24163782 |
T |
|
| Q |
105 |
ccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgttt |
204 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
24163781 |
ccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgctt |
24163682 |
T |
|
| Q |
205 |
ggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
252 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24163681 |
ggccaaggacttggctgagaacaacaaaggttctcgtgtgttggttgt |
24163634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 249
Target Start/End: Complemental strand, 37859428 - 37859211
Alignment:
| Q |
33 |
gaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgg |
131 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||| | ||| ||||||| || ||||| || |||||||| || ||||| ||||| || ||||| ||||||| |
|
|
| T |
37859428 |
gaatggggtcaacctaagtccaagattacccacctcatcttttgcaccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctcttgg |
37859329 |
T |
|
| Q |
132 |
gtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaa |
231 |
Q |
| |
|
| ||||||||||||||||| | || ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
37859328 |
gccttcgtccatatgtgaagcgttacatgatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaa |
37859229 |
T |
|
| Q |
232 |
aggtgctcgtgtgttggt |
249 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37859228 |
aggtgctcgtgtgttggt |
37859211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 249
Target Start/End: Complemental strand, 37863454 - 37863237
Alignment:
| Q |
33 |
gaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgg |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||| || |||||||| || || ||||| |||||||| ||||||| |
|
|
| T |
37863454 |
gaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgcctggtgctgactatcagctcacaaagctcttgg |
37863355 |
T |
|
| Q |
132 |
gtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaa |
231 |
Q |
| |
|
||||||| || |||||||| | ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
37863354 |
gtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggctaaagatttggctgaaaacaacaa |
37863255 |
T |
|
| Q |
232 |
aggtgctcgtgtgttggt |
249 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
37863254 |
aggcgctcgtgttttggt |
37863237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 39030129 - 39030344
Alignment:
| Q |
33 |
gaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaca-caagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgg |
131 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||| | || ||||||| |||||||||| || ||||||||||| || ||||| |||||||| ||||| | |
|
|
| T |
39030129 |
gaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagctcacaaagctcttag |
39030228 |
T |
|
| Q |
132 |
gtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaa |
231 |
Q |
| |
|
| ||| |||||||||| || | |||||||||||||||||||| |||||||| |||| | || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
39030229 |
gcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggctgagaacaacaa |
39030328 |
T |
|
| Q |
232 |
aggtgctcgtgtgttg |
247 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
39030329 |
aggtgcccgtgtgttg |
39030344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 35250860 - 35251080
Alignment:
| Q |
24 |
gcgataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcac-acaagtggtgtagacatgcctggagccgattatcaactcacaa |
122 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| |||||| | || |||||| || |||||||| || |||||||| || |||||||| ||||||| |
|
|
| T |
35250860 |
gcgatcaaggaatggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctcacaa |
35250959 |
T |
|
| Q |
123 |
aactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
222 |
Q |
| |
|
|| | | || |||||||| | |||||| | |||||||||||||||||||||||||| || ||||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
35250960 |
aattgctaggacttcgtccgtcggtgaaacgttatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctga |
35251059 |
T |
|
| Q |
223 |
gaacaacaaaggtgctcgtgt |
243 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
35251060 |
gaacaataaaggtgctcgtgt |
35251080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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