View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_high_1 (Length: 665)

Name: NF2441_high_1
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_high_1
NF2441_high_1
[»] chr2 (1 HSPs)
chr2 (30-659)||(45165438-45166067)


Alignment Details
Target: chr2 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 30 - 659
Target Start/End: Complemental strand, 45166067 - 45165438
Alignment:
Q  30 ataaatgcttcaaatccattgtattttggataacaggatctagaatacttggaagctttgatctgtcggttagctgaggcatggcctacatattgaattt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166067 ataaatgcttcaaatccattgtattttggataacaggatctagaatacttggaagctttgatctgtcggttagctgaggcatggcctacatattgaattt 45165968  T
Q  130 gaaagtcttaaaccataaagtacagcaaaacttaaattttcatccattttctccattatgtaataataatacatacccatgtaaccagagattgatattg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165967 gaaagtcttaaaccataaagtacagcaaaacttaaattttcatccatattctccattatgtaataataatacatacccatgtaaccagagattgatattg 45165868  T
Q  230 atctgaggacatattatgcattggttttcttccagtaagtaattctagaaggacaactccgaaagcatagacatcgctcttatcagttagtttacctgaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165867 atctgaggacatattatgcattggttttcttccagtaagtaattctagaaggacaactccgaaagcatagacatcgctcttatcagttagtttacctgaa 45165768  T
Q  330 aaaagttaccattgttaaattttgttgagtaaaaagaacaaaacatcaagttccatagtccgagtcaaagcttaattataatctcatgcacctaatcagt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165767 aaaagttaccattgttaaattttgttgagtaaaaagaacaaaacatcaagttccatagtccgagtcaaagcttaattataatctcatgcacctaatcagt 45165668  T
Q  430 atttatttagcataatcataatttaaaaactaataatatagaccatgtgatatgtactcgggtgccacatatcctaaagttcccgacatcttcatgttct 529  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165667 atttatttagcataatcataattgaaaaactaataatatataccatgtgatatgtactcgggtgccacatatcctaaagttcccgacatcttcatgttct 45165568  T
Q  530 tgtgttgcacgccagatgctacagcaagtccaaaatctgatagctgaatcacaaaattcagtataaatgtaaatataggttttactattagttgacaaca 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45165567 tgtgttgcacgccagatgctacagcaagtccaaaatctgatagctgaatcacaaaattcagtataaatgtaaatataggttttactattagttgacaaca 45165468  T
Q  630 tgtaagcataatatgtcaaagtataatcta 659  Q
    ||||||||||||||||||||||||||||||    
T  45165467 tgtaagcataatatgtcaaagtataatcta 45165438  T

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