View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_high_11 (Length: 350)
Name: NF2441_high_11
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 55705846 - 55705559
Alignment:
| Q |
10 |
aataatatataatcgtgatcttctctcttggcaaatagctcatcaaccaacgtatcagtagagagtttacccctccgtacaatttctttcagaggaatag |
109 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55705846 |
aataatgtatgatcgtgatcttctctcttggcaaatagctcatcaaccaacgtatcagtagagagtttaccgctccgtacaatttctttcagaggaatag |
55705747 |
T |
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| Q |
110 |
tttcataaagattctcaagatttacgttttgagtgactgctccttcaattgaaccagttaatgtaagattttctgctactattattccagctcccattgc |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55705746 |
tttcaaaaagattctcaagatttacgttttgagtgactgctccttcaattgaaccagttaatgtaagattttctgctactattattccagctcccattgc |
55705647 |
T |
|
| Q |
210 |
catgtactatcctgaacttgctgccacgtcatacattgaagcaatgacaggtttttgggcagcaagagacctgatttcttcccatatt |
297 |
Q |
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| T |
55705646 |
catgtactatcctgcactggctgccacgtcatacattgaagcaatgacaggtttttgggcagcaagagacctgatttcttcccatatt |
55705559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 288
Target Start/End: Original strand, 45878669 - 45878802
Alignment:
| Q |
155 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaagcaat |
254 |
Q |
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| T |
45878669 |
caattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaat |
45878768 |
T |
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| Q |
255 |
gacaggtttttgggcagcaagagacctgatttct |
288 |
Q |
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| T |
45878769 |
gactggttttttggcagccagaagcctgatttct |
45878802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 45860198 - 45860286
Alignment:
| Q |
200 |
ctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaagcaatgacaggtttttgggcagcaagagacctgatttct |
288 |
Q |
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||||||| ||||| || |||||| ||| |||||||| ||| ||||||||||||||| ||||||| ||| |||||| |||||||||| |
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| T |
45860198 |
ctcccatcgccatatagtatcctccactagctgccacatcagacattgaagcaatgattggttttttggctgcaagaagcctgatttct |
45860286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 47293290 - 47293222
Alignment:
| Q |
155 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctg |
223 |
Q |
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| T |
47293290 |
caattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctg |
47293222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 56208877 - 56208972
Alignment:
| Q |
162 |
accagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaagcaatgac |
257 |
Q |
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| T |
56208877 |
accagttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac |
56208972 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 35802699 - 35802828
Alignment:
| Q |
156 |
aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaagcaatg |
255 |
Q |
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||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||| ||||||| ||||| |||| | ||| |||||||||||||| |
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| T |
35802699 |
aattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttgttgccgcatcagacattgaagcaatg |
35802798 |
T |
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| Q |
256 |
acaggtttttgggcagcaagagacctgatt |
285 |
Q |
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|| ||||||| | ||||||||| |||||| |
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| T |
35802799 |
acgggtttttttgaagcaagagatctgatt |
35802828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10521109 - 10521033
Alignment:
| Q |
173 |
taagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaa |
249 |
Q |
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|||||||||||||||| || ||| |||||| |||||||||| ||||||| ||||||||| || ||| |||||||| |
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| T |
10521109 |
taagattttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaa |
10521033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 286
Target Start/End: Original strand, 7972414 - 7972545
Alignment:
| Q |
155 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaagcaat |
254 |
Q |
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|
|||||||||||||||| ||||| |||||||| || || | ||| || |||||||||||||| ||||||| || ||||| ||| |||| ||||||| |
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| T |
7972414 |
caattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaat |
7972513 |
T |
|
| Q |
255 |
gacaggtttttgggcagcaagagacctgattt |
286 |
Q |
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|| ||||||| || ||||||||||||||||| |
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| T |
7972514 |
aactggttttttggaagcaagagacctgattt |
7972545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 7962124 - 7962165
Alignment:
| Q |
247 |
gaagcaatgacaggtttttgggcagcaagagacctgatttct |
288 |
Q |
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|||||||| || ||||||| |||||||||||||||||||||| |
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| T |
7962124 |
gaagcaataactggttttttggcagcaagagacctgatttct |
7962165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 24354113 - 24354011
Alignment:
| Q |
155 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctgccacgtcatacattgaagcaat |
254 |
Q |
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|||||||||||||||| |||||| ||||||| || || ||| ||||||||||||||| |||||| |||||||||||| ||| ||| |||||||| |
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| T |
24354113 |
caattgaaccagttaaggtaagactttctgcaacaatagcatcagttcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaat |
24354014 |
T |
|
| Q |
255 |
gac |
257 |
Q |
| |
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||| |
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|
| T |
24354013 |
gac |
24354011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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