View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_high_16 (Length: 266)

Name: NF2441_high_16
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_high_16
NF2441_high_16
[»] chr4 (4 HSPs)
chr4 (32-237)||(43560479-43560683)
chr4 (1-33)||(43560432-43560464)
chr4 (118-156)||(21173782-21173820)
chr4 (106-159)||(24359816-24359869)
[»] chr1 (4 HSPs)
chr1 (32-159)||(51044468-51044595)
chr1 (93-157)||(16138908-16138972)
chr1 (73-159)||(37962865-37962951)
chr1 (93-157)||(16127398-16127462)
[»] chr3 (2 HSPs)
chr3 (32-159)||(34626631-34626758)
chr3 (65-157)||(44674038-44674130)
[»] chr7 (1 HSPs)
chr7 (73-153)||(45676052-45676132)
[»] chr5 (1 HSPs)
chr5 (106-169)||(2590833-2590896)
[»] chr2 (4 HSPs)
chr2 (95-159)||(27172787-27172851)
chr2 (95-162)||(28205955-28206022)
chr2 (104-167)||(42789005-42789068)
chr2 (86-167)||(37881847-37881928)
[»] chr8 (7 HSPs)
chr8 (75-156)||(5960363-5960444)
chr8 (106-167)||(41351226-41351287)
chr8 (101-156)||(5843121-5843176)
chr8 (104-156)||(5849866-5849918)
chr8 (104-156)||(5921235-5921287)
chr8 (104-156)||(5949127-5949179)
chr8 (104-156)||(5984655-5984707)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 43560479 - 43560683
Alignment:
Q  32 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560479 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 43560578  T
Q  132 tcaatctacaactctttccacatctttgaagtcctgaagaaattcatcaaccatgttagactcttagttttgaagaatgtaacatgattttaacaaatta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43560579 tcaatctacaactctttccacatctttgaagtcctgaagaaattcatcaaccatgttagactcttagttttgaagaatgtaacatgattttaac-aatta 43560677  T
Q  232 cttacc 237  Q
    ||||||    
T  43560678 cttacc 43560683  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43560432 - 43560464
Alignment:
Q  1 acatgcacaaaatgatatatgttgaatcatata 33  Q
    |||||||||||||||||||||||||||||||||    
T  43560432 acatgcacaaaatgatatatgttgaatcatata 43560464  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 21173820 - 21173782
Alignment:
Q  118 atagtttatccatctcaatctacaactctttccacatct 156  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  21173820 atagtttagccatctcaatctacaactttttccacatct 21173782  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 24359816 - 24359869
Alignment:
Q  106 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 159  Q
    |||||||||||| || || |||||||| || |||||||| ||||||||||||||    
T  24359816 atcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttg 24359869  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 51044595 - 51044468
Alignment:
Q  32 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 131  Q
    ||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  51044595 tacctatttccaagtgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatc 51044496  T
Q  132 tcaatctacaactctttccacatctttg 159  Q
    |||||||||| ||||||||||| |||||    
T  51044495 tcaatctacagctctttccacacctttg 51044468  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 16138908 - 16138972
Alignment:
Q  93 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 157  Q
    |||||||||| | ||||||  | |||||||| |||||||||||||||||||||||||||||||||    
T  16138908 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctt 16138972  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 37962951 - 37962865
Alignment:
Q  73 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 159  Q
    ||||||||||||||||||   |||||| || |||||||||||||| || ||||||||||| || || |||||||| ||||| |||||    
T  37962951 ctcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttg 37962865  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 16127398 - 16127462
Alignment:
Q  93 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 157  Q
    |||||||||| | |||||  || ||||| || |||||||||||||||||||||||||||||||||    
T  16127398 ttcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatctt 16127462  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 34626631 - 34626758
Alignment:
Q  32 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 131  Q
    ||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| |||||||| |||| |||||| |||||||    
T  34626631 tacctatttccaagtgcttcatgaagattgataataagatcttcctcttgttttgagaacattcctctcttcaaatcaggtctcagatagttgatccatc 34626730  T
Q  132 tcaatctacaactctttccacatctttg 159  Q
    ||||||||||||||||||||||||||||    
T  34626731 tcaatctacaactctttccacatctttg 34626758  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 44674130 - 44674038
Alignment:
Q  65 ataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 157  Q
    |||||||| ||||||||||  | |||  |||||||||| | |||||| || |  || ||||||||||||||||| |||||||| |||||||||    
T  44674130 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctt 44674038  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 45676052 - 45676132
Alignment:
Q  73 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccaca 153  Q
    ||||||||| | ||||||   ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| |||||    
T  45676052 ctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 45676132  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 2590896 - 2590833
Alignment:
Q  106 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctgaa 169  Q
    ||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacctttgaagccctgaa 2590833  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 27172787 - 27172851
Alignment:
Q  95 cctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 159  Q
    ||||| |||| ||| || |||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  27172787 cctctttttagatctggtctcaaatagtttgtccatcttaatctgcaactctttccacatctttg 27172851  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 28206022 - 28205955
Alignment:
Q  95 cctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaag 162  Q
    |||||||||||||||||||| | ||| || ||||||||||| | |||||| || ||||||| ||||||    
T  28206022 cctctctttaaatcaggcctaagataattgatccatctcaaacgacaacttttcccacatcgttgaag 28205955  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 42789005 - 42789068
Alignment:
Q  104 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 167  Q
    |||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || |||||||    
T  42789005 aaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcagtcctg 42789068  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 37881847 - 37881928
Alignment:
Q  86 gagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 167  Q
    |||||| |||||||||| | |||||| |||||||||||| ||||||  |  | ||||||||| ||||| |||||||| ||||    
T  37881847 gagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaactcttaccacacctttgaagacctg 37881928  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 5960363 - 5960444
Alignment:
Q  75 cttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 156  Q
    |||||||||| |||||  |||| |  || |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  5960363 cttcttgttgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 5960444  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 41351226 - 41351287
Alignment:
Q  106 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 167  Q
    |||||| |||||||| ||||||||||| |||| ||||||||| ||||| |||||||| ||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccacacctttgaagccctg 41351287  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 5843121 - 5843176
Alignment:
Q  101 tttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 156  Q
    ||||||||||| || | ||| ||||||||||| ||||||||||| |||||||||||    
T  5843121 tttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 5849866 - 5849918
Alignment:
Q  104 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 156  Q
    |||||||| || | ||| ||||||||||| ||||||||||| |||||||||||    
T  5849866 aaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 5921235 - 5921287
Alignment:
Q  104 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 156  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5921235 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5921287  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 5949127 - 5949179
Alignment:
Q  104 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 156  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5949127 aaatcaggtcttagataatttatccatcttaatcttcaactctttccacatct 5949179  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 5984655 - 5984707
Alignment:
Q  104 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 156  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5984655 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5984707  T

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