View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_high_24 (Length: 237)

Name: NF2441_high_24
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_high_24
NF2441_high_24
[»] chr4 (17 HSPs)
chr4 (129-208)||(2907916-2907995)
chr4 (129-204)||(2912183-2912258)
chr4 (92-129)||(19653767-19653804)
chr4 (93-130)||(27270351-27270388)
chr4 (92-128)||(6755828-6755864)
chr4 (92-128)||(11651089-11651125)
chr4 (92-128)||(18491186-18491222)
chr4 (92-128)||(36584423-36584459)
chr4 (98-130)||(36955139-36955171)
chr4 (92-128)||(40228554-40228590)
chr4 (92-128)||(44134493-44134529)
chr4 (92-128)||(44817672-44817708)
chr4 (92-128)||(51001475-51001511)
chr4 (92-126)||(2655033-2655067)
chr4 (92-129)||(31581873-31581910)
chr4 (92-128)||(22647110-22647146)
chr4 (92-128)||(31664286-31664322)
[»] chr7 (10 HSPs)
chr7 (92-128)||(19692467-19692503)
chr7 (92-130)||(36675610-36675648)
chr7 (92-129)||(36358433-36358470)
chr7 (92-128)||(26873702-26873738)
chr7 (92-128)||(44724186-44724222)
chr7 (92-130)||(17166863-17166901)
chr7 (98-130)||(8461696-8461728)
chr7 (92-128)||(9014391-9014427)
chr7 (92-128)||(43859090-43859126)
chr7 (92-128)||(46027679-46027715)
[»] chr2 (13 HSPs)
chr2 (92-128)||(22674863-22674899)
chr2 (92-129)||(6750129-6750166)
chr2 (92-129)||(38527172-38527209)
chr2 (92-128)||(1021193-1021229)
chr2 (92-128)||(1115161-1115197)
chr2 (92-128)||(2249580-2249616)
chr2 (92-128)||(28745617-28745653)
chr2 (92-128)||(36436305-36436341)
chr2 (92-126)||(34983277-34983311)
chr2 (92-130)||(44545852-44545890)
chr2 (98-127)||(12994975-12995004)
chr2 (92-128)||(23869662-23869698)
chr2 (92-128)||(38763713-38763749)
[»] chr8 (8 HSPs)
chr8 (92-130)||(9830605-9830643)
chr8 (92-128)||(7012337-7012373)
chr8 (92-128)||(24797177-24797213)
chr8 (92-128)||(34934379-34934415)
chr8 (92-128)||(41838078-41838114)
chr8 (92-127)||(1183823-1183858)
chr8 (92-129)||(11635757-11635794)
chr8 (100-128)||(3886912-3886940)
[»] chr3 (11 HSPs)
chr3 (92-130)||(52571548-52571586)
chr3 (92-129)||(12251631-12251668)
chr3 (92-129)||(36633485-36633522)
chr3 (92-129)||(50527757-50527794)
chr3 (92-128)||(18163717-18163753)
chr3 (92-128)||(28952515-28952551)
chr3 (92-128)||(29126167-29126203)
chr3 (98-130)||(52201979-52202011)
chr3 (92-131)||(13594997-13595036)
chr3 (92-128)||(7160414-7160450)
chr3 (92-128)||(16908932-16908968)
[»] chr1 (13 HSPs)
chr1 (92-130)||(6849750-6849788)
chr1 (92-130)||(17285416-17285454)
chr1 (92-130)||(29981829-29981867)
chr1 (92-128)||(8530082-8530118)
chr1 (92-128)||(16693071-16693107)
chr1 (93-128)||(29169941-29169976)
chr1 (92-126)||(44052581-44052615)
chr1 (98-128)||(45836854-45836884)
chr1 (92-129)||(919832-919869)
chr1 (92-125)||(33012179-33012212)
chr1 (92-129)||(37125691-37125728)
chr1 (99-128)||(48708547-48708576)
chr1 (92-128)||(9042540-9042576)
[»] scaffold0014 (1 HSPs)
scaffold0014 (92-129)||(64932-64969)
[»] chr5 (10 HSPs)
chr5 (92-129)||(9737829-9737866)
chr5 (92-128)||(3631258-3631294)
chr5 (92-128)||(8074362-8074398)
chr5 (92-128)||(13013377-13013413)
chr5 (92-128)||(25701543-25701579)
chr5 (92-128)||(26525352-26525388)
chr5 (98-129)||(41084708-41084739)
chr5 (92-129)||(16285333-16285370)
chr5 (92-125)||(16823133-16823166)
chr5 (92-128)||(30772878-30772914)
[»] scaffold0131 (1 HSPs)
scaffold0131 (92-128)||(11166-11202)
[»] chr6 (5 HSPs)
chr6 (92-128)||(12698493-12698529)
chr6 (92-131)||(24635593-24635632)
chr6 (92-129)||(2660961-2660998)
chr6 (93-126)||(24130363-24130396)
chr6 (92-136)||(13405486-13405530)
[»] scaffold0050 (1 HSPs)
scaffold0050 (92-125)||(19048-19081)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 2907916 - 2907995
Alignment:
Q  129 atactactcgaattggaactttacgagaaacaaaatttggcatacttaagttagactaatttacttcatgttgtgaaaac 208  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2907916 atactactcgaattggaagtttacgtgaaacaaaatttggcatacttaagttagactaatttacttcatgttgtgaaaac 2907995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 2912183 - 2912258
Alignment:
Q  129 atactactcgaattggaactttacgagaaacaaaatttggcatacttaagttagactaatttacttcatgttgtga 204  Q
    |||||| || |||||||| |||| |||||  ||||||||||||||| |||||||||| ||||| ||||||||||||    
T  2912183 atactattcaaattggaagtttatgagaattaaaatttggcatactgaagttagacttatttatttcatgttgtga 2912258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 19653767 - 19653804
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  19653767 cgtggcccaccccagcccatgaagggctccgccactga 19653804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 27270388 - 27270351
Alignment:
Q  93 gtggtccaccccagcccatgaagggctccgccactgat 130  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27270388 gtggcccaccccagcccatgaagggctccgccactgat 27270351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 6755864 - 6755828
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6755864 cgtggcccaccccagcccatgaagggctccgccactg 6755828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 11651089 - 11651125
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  11651089 cgtggcccaccccagcccatgaagggctccgccactg 11651125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 18491222 - 18491186
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18491222 cgtggcccaccccagcccatgaagggctccgccactg 18491186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 36584459 - 36584423
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36584459 cgtggcccaccccagcccatgaagggctccgccactg 36584423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 36955139 - 36955171
Alignment:
Q  98 ccaccccagcccatgaagggctccgccactgat 130  Q
    |||||||||||||||||||||||||||||||||    
T  36955139 ccaccccagcccatgaagggctccgccactgat 36955171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 40228554 - 40228590
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  40228554 cgtggcccaccccagcccatgaagggctccgccactg 40228590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 44134529 - 44134493
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44134529 cgtggcccaccccagcccatgaagggctccgccactg 44134493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 44817672 - 44817708
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44817672 cgtggcccaccccagcccatgaagggctccgccactg 44817708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 51001511 - 51001475
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  51001511 cgtggcccaccccagcccatgaagggctccgccactg 51001475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 2655033 - 2655067
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccac 126  Q
    ||||| |||||||||||||||||||||||||||||    
T  2655033 cgtggcccaccccagcccatgaagggctccgccac 2655067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31581873 - 31581910
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  31581873 cgtggcccaccccagcccatgaagggcttcgccactga 31581910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 22647146 - 22647110
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  22647146 cgtggcccacctcagcccatgaagggctccgccactg 22647110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 31664286 - 31664322
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  31664286 cgtggcccaccccatcccatgaagggctccgccactg 31664322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 19692503 - 19692467
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    |||||||||||||||||||||||||||||||||||||    
T  19692503 cgtggtccaccccagcccatgaagggctccgccactg 19692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 36675610 - 36675648
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36675610 cgtggcccaccccagcccatgaagggctccgccactgat 36675648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 36358433 - 36358470
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  36358433 cgtggcccaccccagcccatgaagggctccgccactga 36358470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 26873738 - 26873702
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26873738 cgtggcccaccccagcccatgaagggctccgccactg 26873702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 44724186 - 44724222
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44724186 cgtggcccaccccagcccatgaagggctccgccactg 44724222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 17166901 - 17166863
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  17166901 cgtggcccaccccagcccatgaagggctccgccgctgat 17166863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 8461728 - 8461696
Alignment:
Q  98 ccaccccagcccatgaagggctccgccactgat 130  Q
    ||||||||||||||||||||||| |||||||||    
T  8461728 ccaccccagcccatgaagggctctgccactgat 8461696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 9014427 - 9014391
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  9014427 cgtggcccaccacagcccatgaagggctccgccactg 9014391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 43859126 - 43859090
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  43859126 cgtggcccaccctagcccatgaagggctccgccactg 43859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 46027715 - 46027679
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  46027715 cgtggcccaccccagcccacgaagggctccgccactg 46027679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 22674863 - 22674899
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    |||||||||||||||||||||||||||||||||||||    
T  22674863 cgtggtccaccccagcccatgaagggctccgccactg 22674899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 6750129 - 6750166
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6750129 cgtggcccaccccagcccatgaagggctccgccactga 6750166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 38527209 - 38527172
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  38527209 cgtggcccaccccagcccatgaagggctccgccactga 38527172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 1021193 - 1021229
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1021193 cgtggcccaccccagcccatgaagggctccgccactg 1021229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 1115161 - 1115197
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1115161 cgtggcccaccccagcccatgaagggctccgccactg 1115197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 2249616 - 2249580
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  2249616 cgtggcccaccccagcccatgaagggctccgccactg 2249580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 28745617 - 28745653
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28745617 cgtggcccaccccagcccatgaagggctccgccactg 28745653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 36436305 - 36436341
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36436305 cgtggcccaccccagcccatgaagggctccgccactg 36436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 34983311 - 34983277
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccac 126  Q
    ||||| |||||||||||||||||||||||||||||    
T  34983311 cgtggcccaccccagcccatgaagggctccgccac 34983277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 44545852 - 44545890
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  44545852 cgtggcccaccccaacccatgaagggctccgccactgat 44545890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 12995004 - 12994975
Alignment:
Q  98 ccaccccagcccatgaagggctccgccact 127  Q
    ||||||||||||||||||||||||||||||    
T  12995004 ccaccccagcccatgaagggctccgccact 12994975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 23869698 - 23869662
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  23869698 cgtggcccaccccagcccatggagggctccgccactg 23869662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 38763749 - 38763713
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  38763749 cgtggcccacctcagcccatgaagggctccgccactg 38763713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 9830643 - 9830605
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9830643 cgtggcccaccccagcccatgaagggctccgccactgat 9830605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 7012373 - 7012337
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  7012373 cgtggcccaccccagcccatgaagggctccgccactg 7012337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 24797177 - 24797213
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24797177 cgtggcccaccccagcccatgaagggctccgccactg 24797213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 34934379 - 34934415
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34934379 cgtggcccaccccagcccatgaagggctccgccactg 34934415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 41838078 - 41838114
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  41838078 cgtggcccaccccagcccatgaagggctccgccactg 41838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 1183858 - 1183823
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccact 127  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1183858 cgtggcccaccccagcccatgaagggctccgccact 1183823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 11635794 - 11635757
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  11635794 cgtggcccaccctagcccatgaagggctccgccactga 11635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 3886912 - 3886940
Alignment:
Q  100 accccagcccatgaagggctccgccactg 128  Q
    |||||||||||||||||||||||||||||    
T  3886912 accccagcccatgaagggctccgccactg 3886940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 52571548 - 52571586
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  52571548 cgtggcccaccccagcccatgaagggctccgccactgat 52571586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 12251631 - 12251668
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  12251631 cgtggtccaccccagcccatgaagggctctgccactga 12251668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 36633522 - 36633485
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  36633522 cgtggcccaccccagcccatgaagggctccgccactga 36633485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 50527757 - 50527794
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  50527757 cgtggcccaccccagcccatgaagggctccgccactga 50527794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 18163753 - 18163717
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18163753 cgtggcccaccccagcccatgaagggctccgccactg 18163717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 28952515 - 28952551
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28952515 cgtggcccaccccagcccatgaagggctccgccactg 28952551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 29126167 - 29126203
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  29126167 cgtggcccaccccagcccatgaagggctccgccactg 29126203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 52202011 - 52201979
Alignment:
Q  98 ccaccccagcccatgaagggctccgccactgat 130  Q
    |||||||||||||||||||||||||||||||||    
T  52202011 ccaccccagcccatgaagggctccgccactgat 52201979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 13594997 - 13595036
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgata 131  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  13594997 cgtggcccaccccagcccatgacgggctccgccactgata 13595036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 7160414 - 7160450
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  7160414 cgtggcccaccccagcccatgaaaggctccgccactg 7160450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 16908932 - 16908968
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  16908932 cgtggcccaccccagcccatgaagggctctgccactg 16908968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 6849788 - 6849750
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  6849788 cgtggcccaccccagcccatgaagggctccgccactgat 6849750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 17285416 - 17285454
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17285416 cgtggcccaccccagcccatgaagggctccgccactgat 17285454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 29981829 - 29981867
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgat 130  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  29981829 cgtggcccaccccagcccatgaagggctccgccactgat 29981867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 8530118 - 8530082
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  8530118 cgtggcccaccccagcccatgaagggctccgccactg 8530082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 16693071 - 16693107
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  16693071 cgtggcccaccccagcccatgaagggctccgccactg 16693107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 29169976 - 29169941
Alignment:
Q  93 gtggtccaccccagcccatgaagggctccgccactg 128  Q
    |||| |||||||||||||||||||||||||||||||    
T  29169976 gtggcccaccccagcccatgaagggctccgccactg 29169941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 44052581 - 44052615
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccac 126  Q
    ||||| |||||||||||||||||||||||||||||    
T  44052581 cgtggcccaccccagcccatgaagggctccgccac 44052615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 128
Target Start/End: Complemental strand, 45836884 - 45836854
Alignment:
Q  98 ccaccccagcccatgaagggctccgccactg 128  Q
    |||||||||||||||||||||||||||||||    
T  45836884 ccaccccagcccatgaagggctccgccactg 45836854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 919832 - 919869
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  919832 cgtggcccaccccagcccatgaagggctccgtcactga 919869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 33012179 - 33012212
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgcca 125  Q
    ||||| ||||||||||||||||||||||||||||    
T  33012179 cgtggcccaccccagcccatgaagggctccgcca 33012212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 37125728 - 37125691
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  37125728 cgtggcccacctcagcccatgaagggctccgccactga 37125691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 48708547 - 48708576
Alignment:
Q  99 caccccagcccatgaagggctccgccactg 128  Q
    ||||||||||||||||||||||||||||||    
T  48708547 caccccagcccatgaagggctccgccactg 48708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 9042540 - 9042576
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  9042540 cgtggcccagcccagcccatgaagggctccgccactg 9042576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 64969 - 64932
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  64969 cgtggcccaccccagcccatgaagggctccgccactga 64932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 9737829 - 9737866
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  9737829 cgtggcccaccccagcccatgaagggctccgccactga 9737866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 3631294 - 3631258
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  3631294 cgtggcccaccccagcccatgaagggctccgccactg 3631258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 8074362 - 8074398
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  8074362 cgtggcccaccccagcccatgaagggctccgccactg 8074398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 13013377 - 13013413
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  13013377 cgtggcccaccccagcccatgaagggctccgccactg 13013413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 25701543 - 25701579
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25701543 cgtggcccaccccagcccatgaagggctccgccactg 25701579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 26525352 - 26525388
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26525352 cgtggcccaccccagcccatgaagggctccgccactg 26525388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 41084708 - 41084739
Alignment:
Q  98 ccaccccagcccatgaagggctccgccactga 129  Q
    ||||||||||||||||||||||||||||||||    
T  41084708 ccaccccagcccatgaagggctccgccactga 41084739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 16285333 - 16285370
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  16285333 cgtggtcgaccccagcccatgaagggctccaccactga 16285370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 16823166 - 16823133
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgcca 125  Q
    ||||| ||||||||||||||||||||||||||||    
T  16823166 cgtggcccaccccagcccatgaagggctccgcca 16823133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 30772914 - 30772878
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  30772914 cgtggcccaccccaacccatgaagggctccgccactg 30772878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 11202 - 11166
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  11202 cgtggcccaccccagcccatgaagggctccgccactg 11166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 12698529 - 12698493
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  12698529 cgtggcccaccccagcccatgaagggctccgccactg 12698493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 24635593 - 24635632
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgata 131  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  24635593 cgtggcccaccccagcccatgaagggcttcgccactgata 24635632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 2660961 - 2660998
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactga 129  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  2660961 cgtggcccatcccagcccatgaagggctccgccactga 2660998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 24130363 - 24130396
Alignment:
Q  93 gtggtccaccccagcccatgaagggctccgccac 126  Q
    |||| |||||||||||||||||||||||||||||    
T  24130363 gtggcccaccccagcccatgaagggctccgccac 24130396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 13405486 - 13405530
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgccactgatactact 136  Q
    ||||| |||||||| |||||||||||||||||| ||||| |||||    
T  13405486 cgtggcccaccccaacccatgaagggctccgcctctgatcctact 13405530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 19081 - 19048
Alignment:
Q  92 cgtggtccaccccagcccatgaagggctccgcca 125  Q
    ||||| ||||||||||||||||||||||||||||    
T  19081 cgtggcccaccccagcccatgaagggctccgcca 19048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University