View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_high_25 (Length: 228)

Name: NF2441_high_25
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_high_25
NF2441_high_25
[»] chr3 (7 HSPs)
chr3 (133-228)||(6099746-6099840)
chr3 (17-122)||(13371844-13371950)
chr3 (5-125)||(15103005-15103126)
chr3 (17-82)||(52613099-52613164)
chr3 (13-82)||(15097292-15097361)
chr3 (9-128)||(19911148-19911268)
chr3 (11-81)||(20129516-20129586)
[»] chr1 (2 HSPs)
chr1 (5-128)||(36478769-36478893)
chr1 (5-81)||(17176106-17176182)
[»] scaffold0089 (1 HSPs)
scaffold0089 (5-122)||(32845-32963)
[»] chr2 (3 HSPs)
chr2 (5-129)||(22197984-22198109)
chr2 (11-122)||(12630102-12630214)
chr2 (11-122)||(33736982-33737094)
[»] scaffold0548 (1 HSPs)
scaffold0548 (5-125)||(9878-9999)
[»] chr8 (2 HSPs)
chr8 (5-129)||(6813915-6814040)
chr8 (11-122)||(25043166-25043278)
[»] chr4 (4 HSPs)
chr4 (5-82)||(37941501-37941578)
chr4 (5-128)||(3311971-3312095)
chr4 (5-124)||(45837722-45837842)
chr4 (11-128)||(49947063-49947181)
[»] chr5 (7 HSPs)
chr5 (5-122)||(17943130-17943248)
chr5 (5-72)||(8376135-8376202)
chr5 (5-122)||(32664443-32664561)
chr5 (29-122)||(20027755-20027850)
chr5 (11-116)||(17009839-17009945)
chr5 (5-63)||(8376220-8376278)
chr5 (5-61)||(36517011-36517067)
[»] chr7 (9 HSPs)
chr7 (133-218)||(28055724-28055809)
chr7 (9-116)||(23925693-23925801)
chr7 (11-128)||(24501589-24501707)
chr7 (17-82)||(27289026-27289091)
chr7 (23-73)||(11513023-11513073)
chr7 (57-114)||(21739259-21739317)
chr7 (11-60)||(21740320-21740369)
chr7 (17-82)||(22938938-22939003)
chr7 (27-73)||(11506300-11506346)
[»] chr6 (3 HSPs)
chr6 (5-114)||(20511902-20512012)
chr6 (11-122)||(22474433-22474545)
chr6 (11-128)||(16729628-16729746)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 6099746 - 6099840
Alignment:
Q  133 tattaaaggtttggtaaacaaaggtccatgcgatgaatgttacaagtataattcatgagttattcgtcgagaacttgatccttggacacaactatt 228  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6099746 tattaaaggtttggtaaacaa-ggtccatgcgatgaatgttacaagtataattcatgagttattcgtcgagaacttgatccttggagacaactatt 6099840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 13371950 - 13371844
Alignment:
Q  17 ctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcactaatag 115  Q
    ||||||||||  |||||| |||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  13371950 ctgttatagcggttttcagaaagcgctaagaaaaacatgttaaaaactgggttagatagcgcttttctataaaagctattattttggtttgcactaatag 13371851  T
Q  116 cgttttt 122  Q
    || ||||    
T  13371850 cgctttt 13371844  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 15103126 - 15103005
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttttt-gtaaaagctattattttggt 103  Q
    ||||||||| | ||||||||||||||| || |||| ||||||||||||||| |||||||| ||||||||||||||||||  |||| |||||| |||||||    
T  15103126 caactcataaacctgttatagcactttacagaaagcgctaagaaaaacatgataaaaactaggttagatagcgctttttcataaacgctattgttttggt 15103027  T
Q  104 tcgcactaatagcgtttttcag 125  Q
    | |||||||||||| |||||||    
T  15103026 ttgcactaatagcgcttttcag 15103005  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 52613099 - 52613164
Alignment:
Q  17 ctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt 82  Q
    |||||||||||||||| | |||| ||||||||||||| |||||||||| |||||||||||||||||    
T  52613099 ctgttatagcactttttagaaagcgctaagaaaaacacgttaaaaactaggttagatagcgctttt 52613164  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 15097361 - 15097292
Alignment:
Q  13 agatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt 82  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||| |  ||||||| ||||||||    
T  15097361 agatctgttatagcactttttagaaagggctaagaaaaacatgttaaaaattaagttagatggcgctttt 15097292  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 19911268 - 19911148
Alignment:
Q  9 tcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgc 107  Q
    |||||||  ||||| ||||||||||||||   ||||| |||||| ||||||||| | ||||||||| ||||||| | |||  ||||||||| ||||||      
T  19911268 tcatagacatgttagagcacttttcataatacgctaaaaaaaacttgttaaaaattgggttagataacgcttttgtataagcgctattattctggttcat 19911169  T
Q  108 actaatagcgtttttcagaaa 128  Q
    |||||||||| |||| |||||    
T  19911168 actaatagcgctttttagaaa 19911148  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 20129516 - 20129586
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttt 81  Q
    ||||| ||||||||||||| |||| |||| | ||| |||||| ||| ||||||| ||||||||||||||||    
T  20129516 atagacctgttatagcactcttcagaaagcgttaaaaaaaacttgtaaaaaactaggttagatagcgcttt 20129586  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 36478769 - 36478893
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagc-gctttttgtaaaagctattattttggt 103  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||| |||||||||||||| |||||||||||   |||||||||| ||||||||||||||    
T  36478769 caactcatagatctattatagcacttttcagaaagcgctaaaaaagacatgttaaaaactgggttagatagcatttttttgtaaacgctattattttggt 36478868  T
Q  104 tcgcactaatagcgtttttcagaaa 128  Q
    |||||||||||||| |||| |||||    
T  36478869 tcgcactaatagcgctttttagaaa 36478893  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 17176106 - 17176182
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttt 81  Q
    ||||||||||| || ||||||||||||||| |||| |||||| ||||| ||||||||| | ||||||||||||||||    
T  17176106 caactcatagacctattatagcacttttcagaaagcgctaaggaaaacttgttaaaaattgggttagatagcgcttt 17176182  T

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Target: scaffold0089 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 32845 - 32963
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggt 103  Q
    ||||| ||||||||||||||||  |||||| |||| |||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||    
T  32845 caacttatagatctgttatagcggttttcagaaagcgctaagaaaaacatgttaaaaactgggttagatagcgcttttctataaacgctattattttggt 32944  T
Q  104 tcgcactaatagcgttttt 122  Q
    | |||||||||||| ||||    
T  32945 ttgcactaatagcgctttt 32963  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 22197984 - 22198109
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttt-ttgtaaaagctattattttggt 103  Q
    |||| |||||| |||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||||| |||| || | || ||||||||||||||    
T  22197984 caacgcatagacctgttatagcacttttaagaaagcgctaagaaaaacatgttaaaaactaggttagatagcactttcttatgaacgctattattttggt 22198083  T
Q  104 tcgcactaatagcgtttttcagaaac 129  Q
    | |||||||||||| |||||||||||    
T  22198084 ttgcactaatagcgcttttcagaaac 22198109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 12630214 - 12630102
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| ||||||||||||| |||| |||  ||||| |||||| ||| ||||| | ||||||||||||||||| | |||  ||||||||| | ||||||||    
T  12630214 atagacctgttatagcactcttcagaaaatgctaaaaaaaacttgtaaaaaattgggttagatagcgcttttctataagtgctattattcttgttcgcac 12630115  T
Q  110 taatagcgttttt 122  Q
    |||||||| ||||    
T  12630114 taatagcgctttt 12630102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 33737094 - 33736982
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| || |||||||||| | || |||| ||||| |||||| ||| ||||||| ||||||||||||||||| | |||  ||||||||| | |||| |||    
T  33737094 atagacctattatagcactctgcagaaagcgctaaaaaaaacttgtaaaaaactgggttagatagcgcttttctataagcgctattattcttgttcacac 33736995  T
Q  110 taatagcgttttt 122  Q
    |||||||| ||||    
T  33736994 taatagcgctttt 33736982  T

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Target: scaffold0548 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 9878 - 9999
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttttt-gtaaaagctattattttggt 103  Q
    ||||||||| | ||||||||||||||| || |||| ||||||||||||||| |||||||| ||||||||||||||||||  |||| |||||| |||||||    
T  9878 caactcataaacctgttatagcactttacagaaagcgctaagaaaaacatgataaaaactaggttagatagcgctttttcataaacgctattgttttggt 9977  T
Q  104 tcgcactaatagcgtttttcag 125  Q
    | |||||||||||| |||||||    
T  9978 ttgcactaatagcgcttttcag 9999  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 6813915 - 6814040
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgcttt-ttgtaaaagctattattttggt 103  Q
    ||||||||||  |||||||||| ||||||| |||| |||||||||||||||||||||| | ||||||||||||||||  | ||||  |||||||||||||    
T  6813915 caactcataggcctgttatagcgcttttcagaaagcgctaagaaaaacatgttaaaaattgggttagatagcgctttcctataaacactattattttggt 6814014  T
Q  104 tcgcactaatagcgtttttcagaaac 129  Q
    ||| |||||||||| |||||||||||    
T  6814015 tcggactaatagcgcttttcagaaac 6814040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 25043278 - 25043166
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    |||||||| ||||||||||   || |||| ||||| |||||| ||| |||  || ||||||||||||||||| | |||  ||||||||| | |||| |||    
T  25043278 atagatctattatagcactccgcagaaagcgctaaaaaaaacttgtaaaaccctgggttagatagcgcttttctttaagcgctattattcttgttcacac 25043179  T
Q  110 taatagcgttttt 122  Q
    |||||||| ||||    
T  25043178 taatagcgctttt 25043166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 37941501 - 37941578
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt 82  Q
    ||||||||| | ||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  37941501 caactcataaacctgttatagcactttacagaaagagctaagaaaaacatgttaaaagctgggttagatagcgctttt 37941578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 3311971 - 3312095
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggt 103  Q
    |||| |||||| |||||||||| |||| || |||| |||||||||||| |||| |||| | |  ||||| ||||| || || ||  ||||||||||||||    
T  3311971 caacccatagacctgttatagcgctttacagaaagtgctaagaaaaacttgtttaaaattggactagatggcgctcttctgcaagcgctattattttggt 3312070  T
Q  104 tcgcactaatagcgtttttcagaaa 128  Q
    || ||||||||||| ||||||||||    
T  3312071 tcacactaatagcgcttttcagaaa 3312095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 45837722 - 45837842
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgct-ttttgtaaaagctattattttggt 103  Q
    |||| ||||||  ||||||||||||||||| |||| |||||||||||| ||||||||| | |  ||||||||||| || || |||  || ||||||||||    
T  45837722 caacccatagacgtgttatagcacttttcagaaagcgctaagaaaaacttgttaaaaattggactagatagcgctcttctgcaaacactgttattttggt 45837821  T
Q  104 tcgcactaatagcgtttttca 124  Q
     | ||||||||||| ||||||    
T  45837822 gcacactaatagcgcttttca 45837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 49947181 - 49947063
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| |||||||| |||| |||| |||| ||||| |||| | ||| ||||||| ||||||||||||||||| | |||  ||||||||| | ||||| ||    
T  49947181 atagacctgttataacactcttcagaaagcgctaaaaaaagcttgtgaaaaactgggttagatagcgcttttctataagcgctattattcttgttcgtac 49947082  T
Q  110 taatagcgtttttcagaaa 128  Q
    |||||||| |||| |||||    
T  49947081 taatagcgcttttaagaaa 49947063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 17943248 - 17943130
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttttgt-aaaagctattattttggt 103  Q
    ||||||||||| |||||||||||||||||| |||| |||||| ||||| ||||||||| | | |||||||||||||||  | ||| ||||||||| | ||    
T  17943248 caactcatagacctgttatagcacttttcagaaagcgctaaggaaaacttgttaaaaattggattagatagcgcttttcctgaaacgctattattattgt 17943149  T
Q  104 tcgcactaatagcgttttt 122  Q
    ||||| |||||||| ||||    
T  17943148 tcgcattaatagcgctttt 17943130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 8376135 - 8376202
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttaga 72  Q
    ||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  8376135 caacttatagacctgttatagcacttttcagaaagcgctaagaaaaacatgttaaaaactgggttaga 8376202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 32664443 - 32664561
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttttgt-aaaagctattattttggt 103  Q
    ||||||||| | |||||||||||||||||| |||| |||||| ||||| ||||||||| | |||||||||||||||||  | ||| ||||||||| | ||    
T  32664443 caactcataaacctgttatagcacttttcagaaagcgctaaggaaaacttgttaaaaattgggttagatagcgcttttcctgaaacgctattattattgt 32664542  T
Q  104 tcgcactaatagcgttttt 122  Q
    | ||| |||||||| ||||    
T  32664543 ttgcattaatagcgctttt 32664561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 20027755 - 20027850
Alignment:
Q  29 ttttcataaagagctaagaaaaacatgttaaaaa-cttggttagatagcgctttttg-taaaagctattattttggttcgcactaatagcgttttt 122  Q
    |||||| |||| || ||||||||||||||||||| || ||||||||||||||||||  |||  ||||||||||||||| |||||||||||| ||||    
T  20027755 ttttcaaaaagcgccaagaaaaacatgttaaaaaactgggttagatagcgcttttttataagcgctattattttggtttgcactaatagcgctttt 20027850  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 17009945 - 17009839
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| ||||||||||||| |||| |||| ||||| |||| | ||||||||||| ||||||||||||||||| | |||  ||||||||| | ||||| ||    
T  17009945 atagacctgttatagcactcttcagaaagcgctaaaaaaagcttgttaaaaactgggttagatagcgcttttctataagtgctattattcttgttcgtac 17009846  T
Q  110 taatagc 116  Q
    |||||||    
T  17009845 taatagc 17009839  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 8376278 - 8376220
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaac 63  Q
    |||| |||||| |||||||||||||||||| |||| ||||||||||||| || ||||||    
T  8376278 caacccatagacctgttatagcacttttcagaaagcgctaagaaaaacaagtgaaaaac 8376220  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 36517011 - 36517067
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaa 61  Q
    ||||||||||| |||||||||||||||  | |||| |||||||||||  ||||||||    
T  36517011 caactcatagacctgttatagcactttcaaaaaagcgctaagaaaaatttgttaaaa 36517067  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 28055809 - 28055724
Alignment:
Q  133 tattaaaggtttggtaaacaaaggtccatgcgatgaatgttacaagtataattcatgagttattcgtcgagaacttgatccttgga 218  Q
    |||||| |||||||||||  |||||||||||||||||| |||||||| | |||| ||||||||| |||| ||||||||||||||||    
T  28055809 tattaatggtttggtaaaacaaggtccatgcgatgaatattacaagtgtcattcctgagttatttgtcgggaacttgatccttgga 28055724  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 23925801 - 23925693
Alignment:
Q  9 tcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgc 107  Q
    ||||||| |||||||| | |||| ||||||| |||||||||||  ||||||||||| ||||||||||||||||| | |||  ||||||||| | |||| |    
T  23925801 tcatagacctgttataacgctttacataaagcgctaagaaaaatttgttaaaaactgggttagatagcgcttttgtataagcgctattattctagttcac 23925702  T
Q  108 actaatagc 116  Q
    |||||||||    
T  23925701 actaatagc 23925693  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 24501707 - 24501589
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| ||||||||||||  |||| |||  ||||| |||| | ||||||||||| ||||||||||||||||| | |||  ||||||||| | ||||| ||    
T  24501707 atagacctgttatagcacccttcagaaaacgctaaaaaaagcttgttaaaaactgggttagatagcgcttttctataagtgctattattcttgttcgtac 24501608  T
Q  110 taatagcgtttttcagaaa 128  Q
    |||||||| |||| |||||    
T  24501607 taatagcgcttttaagaaa 24501589  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 27289091 - 27289026
Alignment:
Q  17 ctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt 82  Q
    ||||||||||||||| || |||| |||||||||||| | ||||||| | |||||||||||||||||    
T  27289091 ctgttatagcactttgcaaaaagcgctaagaaaaactttttaaaaaatgggttagatagcgctttt 27289026  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 11513073 - 11513023
Alignment:
Q  23 tagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagat 73  Q
    |||||||||| | |||| |||||||||||||||||||||||| ||||||||    
T  11513073 tagcactttttagaaagcgctaagaaaaacatgttaaaaactgggttagat 11513023  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 21739317 - 21739259
Alignment:
Q  57 taaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcactaata 114  Q
    |||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||||||    
T  21739317 taaaaactgggttagatagcgcttttctataaacgctattattttggtttgcactaata 21739259  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 21740369 - 21740320
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaa 60  Q
    ||||| |||||||||||||||||| |||| | ||||||||||||||||||    
T  21740369 atagacctgttatagcacttttcagaaagcgttaagaaaaacatgttaaa 21740320  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 22938938 - 22939003
Alignment:
Q  17 ctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt 82  Q
    ||||||||||||||| || |||| |||||||||||| | || |||| | |||||||||||||||||    
T  22938938 ctgttatagcactttgcagaaagcgctaagaaaaactttttgaaaaatgggttagatagcgctttt 22939003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 11506346 - 11506300
Alignment:
Q  27 acttttcataaagagctaagaaaaacatgttaaaaacttggttagat 73  Q
    |||||| | |||| |||||||||||||||||||||||| ||||||||    
T  11506346 actttttagaaagcgctaagaaaaacatgttaaaaactaggttagat 11506300  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 20511902 - 20512012
Alignment:
Q  5 caactcatagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggt 103  Q
    ||||| ||||| ||||||||||  |||||| ||||  ||||||||||||||||||||||| ||||||| ||||||||| | ||||  ||||||||||| |    
T  20511902 caacttatagacctgttatagcggttttcagaaagcactaagaaaaacatgttaaaaactaggttagacagcgcttttctataaacactattattttgat 20512001  T
Q  104 tcgcactaata 114  Q
    | |||||||||    
T  20512002 ttgcactaata 20512012  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 22474545 - 22474433
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| || |||||||||| | || |||| ||||| |||||| ||| ||||| | ||||||||||||||||| | |||  ||||||||| | ||||||||    
T  22474545 atagacctattatagcactctgcagaaagcgctaaaaaaaacttgtaaaaaattgggttagatagcgcttttctataagcgctattattcttgttcgcac 22474446  T
Q  110 taatagcgttttt 122  Q
    |||||||| ||||    
T  22474445 taatagcgctttt 22474433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 16729746 - 16729628
Alignment:
Q  11 atagatctgttatagcacttttcataaagagctaagaaaaacatgttaaaaacttggttagatagcgctttt-tgtaaaagctattattttggttcgcac 109  Q
    ||||| ||||||||||||| |||| |||| ||||| |||| | ||| ||||||| ||||| ||||||||||| | |||  | ||||||| | ||||| ||    
T  16729746 atagacctgttatagcactcttcagaaagcgctaaaaaaagcttgtgaaaaactgggttacatagcgcttttctataagtgatattattcttgttcgtac 16729647  T
Q  110 taatagcgtttttcagaaa 128  Q
    |||||||| |||| |||||    
T  16729646 taatagcgcttttaagaaa 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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