View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_high_5 (Length: 503)
Name: NF2441_high_5
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 41880471 - 41880834
Alignment:
| Q |
13 |
aatatcatttgcttaacttgtccaatcattattcaaaatcataattgtactgcaattttcttgggcatcttctctatgtcagttgcttaacattgtaaac |
112 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41880471 |
aatatcatttgcttaacttatccaatcattattcaaaatcataattgtattgcaattttcttgggcatcttctttatgtcagttgcttaacattgtaaat |
41880570 |
T |
|
| Q |
113 |
ttaatcaacaataaagaacttctaccatatgagatgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41880571 |
ttaatcaacaataaagaacttctaccatatgaaatgaaaattgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaac |
41880670 |
T |
|
| Q |
213 |
cgaaaagagagaaatgacaccagagttgcaagaactcctagactagagttacaagaactcgggcaactttatattgttcaattagaagcgaaactctctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
41880671 |
cgaaaagagagaaatgacaccagagttgcaagaactcctagaccagagttacaagaactcgggcaactttatattgttcaattataagcggaactctctc |
41880770 |
T |
|
| Q |
313 |
tgatttaagagcaatacttctctggtcatgcttatctctctgcggatgtcttgaattatttact |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41880771 |
tgatttaagagcaatacttctctggtcatgcttatctctctgcggatgtcttgaattatttact |
41880834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 44459576 - 44459367
Alignment:
| Q |
36 |
aatcattattcaaaatcataattgtactgcaattttcttgggcatcttctctatgtcagttgcttaacattgtaaacttaatcaacaataaagaacttct |
135 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44459576 |
aatcattattcaaaatcataattgtactccaatttttttgggcatcttctctatatcagttgcttaacattgtaaacttaatcaacaataaagaacttct |
44459477 |
T |
|
| Q |
136 |
accatatgagatgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccag |
235 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||| || || ||||||| | ||| | |||||||||||||||| |
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|
| T |
44459476 |
accatatgaaatgaaaactgtggtattgacggataatttatgagcttgaagctctaac----------aatggaagcagaacatagagaaatgacaccag |
44459387 |
T |
|
| Q |
236 |
agttgcaagaactcctagac |
255 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
44459386 |
agttgcaagaactcctagac |
44459367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 41883076 - 41883117
Alignment:
| Q |
390 |
ataatcatctttggatttcagtcttatttattaaccttttat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41883076 |
ataatcatctttggatttcagtcttatttatcaaccttttat |
41883117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 50316562 - 50316199
Alignment:
| Q |
13 |
aatatcatttgcttaacttgtccaatcattattcaaaatcataattgtactgcaattttcttgggcatcttctctatgtcagttgcttaacattgtaaac |
112 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50316562 |
aataacattttcttaacttgtccaatcattattcaaaatcataattgtactgcaattttcttgggcatcttctctatgtcagttgcttaacattgtaaac |
50316463 |
T |
|
| Q |
113 |
ttaatcaacaataaagaacttctaccatatgagatgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
50316462 |
ttaatcaacaataaagaacttctaccatatgaaatgaaaattgtggtattgattgataatttatgagcttgaagctctcacattggaagaaaatggaaac |
50316363 |
T |
|
| Q |
213 |
cgaaaagagagaaatgacaccagagttgcaagaactcctagactagagttacaagaactcgggcaactttatattgttcaattagaagcgaaactctctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
50316362 |
cgaaaagagagaaatgacaccagagttgcaagaactcctagaccagagttacaagaactcgagcaactttatattgttcagttagaagcgaaactctctc |
50316263 |
T |
|
| Q |
313 |
tgatttaagagcaatacttctctggtcatgcttatctctctgcggatgtcttgaattatttact |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50316262 |
tgatttaagagcaatacttctctggtcatgcttatctctctgcggatgtcttgaattatttact |
50316199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 32956665 - 32956767
Alignment:
| Q |
40 |
attattcaaaatcataattgtactgcaat--tttcttgggcatcttctctatgtcagttgcttaacattgtaaacttaatcaacaataaagaacttctac |
137 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32956665 |
attattcaaaatcttaaatgtactgcaatcttttctagggcatcttctctaagtcagctgcttaacattgtaaacttaatcaacaataaagaacttctac |
32956764 |
T |
|
| Q |
138 |
cat |
140 |
Q |
| |
|
||| |
|
|
| T |
32956765 |
cat |
32956767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 32957099 - 32957213
Alignment:
| Q |
146 |
atgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
245 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| ||| |||| | ||| ||||||||| ||| ||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
32957099 |
atgaaaactgtgttattggctgataatttatgaactttaagctcgaacaatggaagaaagtggcaacagaaaacagagaaatgacaccagaattgcaaga |
32957198 |
T |
|
| Q |
246 |
actcctagactagag |
260 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
32957199 |
actcctagaccagag |
32957213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 11670800 - 11670437
Alignment:
| Q |
13 |
aatatcatttgcttaacttgtccaatcattattcaaaatcataattgtactgcaattttcttgggcatcttctctatgtcagttgcttaacattgtaaac |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11670800 |
aataacatttgcttaacttgtccaatcattattcaaaatcataattgtactgcaattttcttgggcatattctctatgtcagttgcttaacattgtaaac |
11670701 |
T |
|
| Q |
113 |
ttaatcaacaataaagaacttctaccatatgagatgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
11670700 |
ttaatcaacaataaagaacttctaccatatgaaatgaaaactggggtattgattgataatttatgagcttaaagctctcacagtggaagaaaattgaaac |
11670601 |
T |
|
| Q |
213 |
cgaaaagagagaaatgacaccagagttgcaagaactcctagactagagttacaagaactcgggcaactttatattgttcaattagaagcgaaactctctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11670600 |
cgaaaagagagaaatgacaccagagttgcaagaactcctagaccagagttgcaagaactcgggcaactttatattgttcagttagaagcgaaactctctc |
11670501 |
T |
|
| Q |
313 |
tgatttaagagcaatacttctctggtcatgcttatctctctgcggatgtcttgaattatttact |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11670500 |
tgatttaagagcaatacttctctggtcatgcttatctctctgtggatgtcttgaattatttact |
11670437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 28049808 - 28049711
Alignment:
| Q |
148 |
gaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaagaac |
247 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| || ||| |||||| | ||||| | |||||||||||||||||||||||||| |
|
|
| T |
28049808 |
gaaaactctggtattgactgataatttatgagcttgaagctctaacaatggaagca----------gaaaataaagaaatgacaccagagttgcaagaac |
28049719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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