View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_1 (Length: 723)
Name: NF2441_low_1
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 9 - 620
Target Start/End: Complemental strand, 45277340 - 45276730
Alignment:
| Q |
9 |
gaaaagaatctgtttatcatacatacagttgactatacctattggtttagcttttatttatgaaagaatattgatattccattctctgttagtccaaatt |
108 |
Q |
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| T |
45277340 |
gaaaagaatctgtttatcatacatacagttgactatacctattggtttagcttttatttatgaaagaatattgatattccattctctgttagtccaaatt |
45277241 |
T |
|
| Q |
109 |
cgattctccaactactttacaaaacaagaaaataaatttctatatttattcacaaaaagtgattaggcaaattcatccctaaaagcgccggtatcaatca |
208 |
Q |
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| T |
45277240 |
cgattctccaactactttacaaaacaagaaaataaatttctatatttattcacaaaaagtgattaggcaaattcatccctaaaagcgccggtatcaatca |
45277141 |
T |
|
| Q |
209 |
aaatagtccatgatttttgcaaatgcaactgcaaatattaatctctcgagtcgggtagaactgagagttaacattgttgcatttaaacttaagatgatgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45277140 |
aaatagtccatgatttttgcaaatgcaactgcaaacattactctctcgagtcgggtagaactgagagttaacactgttgcatttaaacttaagatgatgt |
45277041 |
T |
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| Q |
309 |
ttgccaatcgacttatacatcctaaaattgtaaagcgttggtcaaaataatcaatctatcaccgttagagattacagagacattaaccaaataagttgcc |
408 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |
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| T |
45277040 |
ttgccaatcgacttatacatcctaaaattgtaaatcgttggtcaaaataatcaatctatcagtgttagagattatagagacattaaccaaataagtt--c |
45276943 |
T |
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| Q |
409 |
cctccgtattaatagttaatcattcgttcgagtttgaagtgacttccaactcgttaa-ctttaagtcaaaccaatttagttatccaacccaaataatatc |
507 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45276942 |
cctccgtgttaatagttaatcattcgttcgagtttgaagtgacttccaacttgttaacctttaagtcaaaccaattgagttatccaacccaaataatatc |
45276843 |
T |
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| Q |
508 |
aactttggaactcgaacttttgcgaccaaccagtaaatcaaaacgttaacagccactgaaccacttagcacattaataaaatggggcaatttatttttgt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
45276842 |
aactttggaactcgaacttttgcgaccaaccagtaaatcaaaacgttaacagccactgcaccacttagcacattaataaaatgggacaatttatttttgt |
45276743 |
T |
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| Q |
608 |
taatatggcttat |
620 |
Q |
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||||||||||||| |
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| T |
45276742 |
taatatggcttat |
45276730 |
T |
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