View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_10 (Length: 432)
Name: NF2441_low_10
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 32811950 - 32812333
Alignment:
| Q |
16 |
atagatagatattaaattccctggttgaaacgaaaatatattcaataatgtattaattgattcaaattaacattagttatacactagaaactaatgttat |
115 |
Q |
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| T |
32811950 |
atagatagatataaaat-ccctggttgaaacgaaaatatatt---taatgtattaattgattcaaattaactttagttatatactagaaactaatgttat |
32812045 |
T |
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| Q |
116 |
tactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaata |
215 |
Q |
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| T |
32812046 |
tactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaata |
32812145 |
T |
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| Q |
216 |
ttcttagacaaccttgctgcattggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgattccctccacatgtcg |
315 |
Q |
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| T |
32812146 |
ttcttagacaaccttgctgcattggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgatcccctccacatgtcg |
32812245 |
T |
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| Q |
316 |
atttcccccaccctgagatgatcaagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaact |
403 |
Q |
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| T |
32812246 |
atttcccccaccctgagatgatcaagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaact |
32812333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 136 - 406
Target Start/End: Original strand, 32829599 - 32829866
Alignment:
| Q |
136 |
taacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaatattcttagacaaccttgctgc |
235 |
Q |
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| T |
32829599 |
taacatccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatggacttagcttcaaaaatttcttagacaaccttgcttc |
32829698 |
T |
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| Q |
236 |
attggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgattccctccacatgtcgatttcccccaccctgagatg |
335 |
Q |
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||||||| | |||||| ||||| | |||||||||| |||||||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||| |
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| T |
32829699 |
attggctaccaacatgaaactgactgcgacacccttccatgacagacaactcctagctgcacgatctcctccacatgtaaacttcccccaccctgagatg |
32829798 |
T |
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| Q |
336 |
atcaagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaacttga |
406 |
Q |
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| T |
32829799 |
atcaagctcgataa---tctacctttaggcattaaatctggtgtctttgaagcatcctcagaagaatttga |
32829866 |
T |
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