View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_11 (Length: 420)
Name: NF2441_low_11
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 6287030 - 6286627
Alignment:
| Q |
1 |
ccaaagcatattgcactttatgtgagtaatatgtttgatttatatagaaatattgctagatatataatatctaaccatttgcttcttatattagtcccgc |
100 |
Q |
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| T |
6287030 |
ccaaagcatattgcactttatgtgagtaatatgtttgatttatatagaattattgctagatatatattatctaaccatttgcttcttatattggtccccc |
6286931 |
T |
|
| Q |
101 |
tccattagtgtaatgatacaataatgtttatatcaaactaaaagaaaatgctggaaaaaatatataaatttatattaccaaatttatgaaggctccatgt |
200 |
Q |
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| T |
6286930 |
tccattagtgtattgatacaataatgtttatatcaacctaaaagataatgctggaaaaaatata--aatttatattaccacatttatgaaggctccatgt |
6286833 |
T |
|
| Q |
201 |
atctattcagtttaggcctcaaaatatgttagacgaccatgataaacaatatgaaggctctatgtatctatagagtttcggcctcaaaatatgatagacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6286832 |
atctattcagtttaggcctcaaaatatgttagacgaccatgataaacaatatgaaggctctatgtatctatacagcttcggcctcaaaatatgatagacg |
6286733 |
T |
|
| Q |
301 |
gccatgatnnnnnnnnnnnntgagatttcttaacttacaatctagcttttaatgatgagttaattttttgttgtatatt----gtagtaaatagtaggtg |
396 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
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| T |
6286732 |
gccatgat---aaaaaaaaatgagatttcttaactcacaatctagcttttaatgatgagttaattttttgttgttcattgtacgtagtaaatagtagatg |
6286636 |
T |
|
| Q |
397 |
cgtgtgaat |
405 |
Q |
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| T |
6286635 |
cgtgtgaat |
6286627 |
T |
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