View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_16 (Length: 403)
Name: NF2441_low_16
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 28 - 394
Target Start/End: Original strand, 42522090 - 42522457
Alignment:
| Q |
28 |
cattgactatatctccagtggcaatgagtcttgaagagttgataccagcaaaccatgccaagtcttacctattttccattttcatcagaacaggccttgt |
127 |
Q |
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| T |
42522090 |
cattgactatatctccagtggcaatgagtcttgaagagttgataccagcaaaccatgccaagtcttacctattttccattttcatcagaacaggccttgt |
42522189 |
T |
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| Q |
128 |
attttctacccttgttattggtctctcagttccctttt-tggtgagtcttaatcaatgagttgtatgatataattaagataatcaattgcattagtttct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42522190 |
attttctacccttgttattggtctctcagttcccttttttggtgagtcttaatcaatgagttgtatgatataattaagataaccaattgcattagtttct |
42522289 |
T |
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| Q |
227 |
taatcaatcaatcattgtaatgtgacatagttgcactatgctatggcaaattggcaataacatgtctaattattctttgcaggtttggtgatgtccttga |
326 |
Q |
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| T |
42522290 |
taatcaatcaatcattgtaatgtgacatagttgcactatgctatggcaaattggcaataacatgtctaattattctttgcaggtttggtgatgtccttga |
42522389 |
T |
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| Q |
327 |
ttggatcattacttacaatgcttgtagtaagtttccttcagtttttatattattgctcctagaattat |
394 |
Q |
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| T |
42522390 |
ttggatcattacttacaatgcttgtagtaagtttccttcagtttttatattattgctcctagaattat |
42522457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 19240333 - 19240269
Alignment:
| Q |
302 |
tttgcaggtttggtgatgtccttgattggatcattacttacaatgcttgtagtaagtttccttca |
366 |
Q |
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|||||||||||||| ||||| || |||||||| || || |||||| |||| |||||||||||||| |
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| T |
19240333 |
tttgcaggtttggtaatgtcattaattggatccttgctcacaatgtttgttgtaagtttccttca |
19240269 |
T |
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