View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_18 (Length: 390)
Name: NF2441_low_18
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_18 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 2419 - 2708
Alignment:
| Q |
30 |
cttgtaaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcaaagagtc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2419 |
cttgtaaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcgaagagtc |
2518 |
T |
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| Q |
130 |
cagttgaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtgccacct |
229 |
Q |
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| T |
2519 |
cagttgaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtgccacct |
2618 |
T |
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| Q |
230 |
catgaaataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtgg |
319 |
Q |
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| T |
2619 |
catgaaataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtgg |
2708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 6364688 - 6364977
Alignment:
| Q |
30 |
cttgtaaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcaaagagtc |
129 |
Q |
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| T |
6364688 |
cttgtaaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcgaagagtc |
6364787 |
T |
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| Q |
130 |
cagttgaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtgccacct |
229 |
Q |
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| T |
6364788 |
cagttgaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtgccacct |
6364887 |
T |
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| Q |
230 |
catgaaataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtgg |
319 |
Q |
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| T |
6364888 |
catgaaataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtgg |
6364977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 6371329 - 6371617
Alignment:
| Q |
30 |
cttgtaaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcaaagagtc |
129 |
Q |
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|||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| |
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| T |
6371329 |
cttgcaaaccaatgtcctccattgagaataacaaagtcaaaatcttcaatttgagttatccaattttcatctggctcatcgatgtaaagattgaatagtc |
6371428 |
T |
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| Q |
130 |
cagttgaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtgccacct |
229 |
Q |
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| T |
6371429 |
cagttgaacttggaccttttaaatctgatttttttgatcttaccaaaaaaggtgtccaaaaagaggccattgtgaaattgtagcttgggtagttccacct |
6371528 |
T |
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| Q |
230 |
catgaaataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtg |
318 |
Q |
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| T |
6371529 |
catgaaataattattttgtgagtgtgatacaactacgggctattccacctgaaagtattaaagattaaacaaaaagatgcaattttgtg |
6371617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 6554667 - 6554731
Alignment:
| Q |
36 |
aaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatc |
100 |
Q |
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| T |
6554667 |
aaccaatgtcctccattgattatgacatagtcaaaatcttcaatttgtgatgtccatttttcatc |
6554731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 6554826 - 6554910
Alignment:
| Q |
195 |
gccattgtgaaattgtaggttgggtagtgccacctcatgaaataatcattttgtgagtgtgatacaactacgggccattccacct |
279 |
Q |
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| T |
6554826 |
gccatggtgaaattgtaacttgggtatttccatctcatgaaatagtcatcttttgtgtatgatacatctataggccattccacct |
6554910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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